Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0779 ATGATTAAAGGTAACGAGCGTCGTTACCGGGGCGTGAGGAAGAGACCGTGGGGCCGTTTCGCCGCGGAGATCAGGGACCCCGTCAAGAAGGCAAGGGTGTGGCTCGGCACCTTTCACACACCCGAGGACGCGGCACGTGCCTACGACGCCGCTGCACGTGCGCTTCGGGGACCCAAGGCCAAGACCAACTTCCCTCGCCCGCAACAACAGTTCGACGGTTACAACGATTACGACGCCGCCGCCGGTGATTTTCCCCATCGCCGGTTTTGCTCCGGCGAAGGCGGAGGGGAGGTTCTGGACCACTGGAGACCGACGTCAAGCGGCATGAGCAGCACCGTTGAGTCGTTCAGCGGCCCCCGCGTTGGGGCGGCGGTGCCAGTGACCGCCGCCACCCGGAGGTACCCTCGGACGCCGCCGGTGGTCCCTGAGGACTGCCGCAGCGACTGCGACTCCTCGTTGTCGGGTCTTGACGACGGCGGGGACGACAACGTCGTTTCGTCTTCGTTCTCGCCGTTTTGCCGGAAACCGTTGCCGTTTGATCTCAACGCGGTGCCGTTGGATGATGTTGCTGACGTGGCGCCCGGTGGTGGTGGTGATGATCTGCGCTGCACTGTTCTCTGCCTCTGA 627 0.6427 MIKGNERRYRGVRKRPWGRFAAEIRDPVKKARVWLGTFHTPEDAARAYDAAARALRGPKAKTNFPRPQQQFDGYNDYDAAAGDFPHRRFCSGEGGGEVLDHWRPTSSGMSSTVESFSGPRVGAAVPVTAATRRYPRTPPVVPEDCRSDCDSSLSGLDDGGDDNVVSSSFSPFCRKPLPFDLNAVPLDDVADVAPGGGGDDLRCTVLCL* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0779 208 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700|GO:0006355
Dod05g0779 208 Pfam AP2 domain 8 57 IPR001471 GO:0003700|GO:0006355
Dod05g0779 208 SUPERFAMILY DNA-binding domain 8 66 IPR016177 GO:0003677
Dod05g0779 208 SMART rav1_2 8 71 IPR001471 GO:0003700|GO:0006355
Dod05g0779 208 Gene3D AP2/ERF domain 7 66 IPR036955 GO:0003700|GO:0006355
Dod05g0779 208 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700|GO:0006355
Dod05g0779 208 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Dod05g0779 208 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 180 - -
Dod05g0779 208 PANTHER ETHYLENE RESPONSE FACTOR 5 180 - -
Dod05g0779 208 CDD AP2 8 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0779 Dod-Chr5 12280652 12282044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0779 5 208 AP2-EREBP Transcription Factor Family AT1G50640 55.869 1.30e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod05g0779 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0779 K09286 - gmx:100782025 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0779 05 12280652 12282044 Dod08g0249 08 2739046 2741207 PCT