Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0778 ATGGGTAGCGAAGAAGAGAGGGTTCTGGAGAACCAGCTGGAGCTTCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGATCAAGCTCTTCTTTCTGATCCTTCCGACCCCGAGCTTCTCGCGGTTCATGAGGAACTTGTTCAGGCAATTAAGGATGCAGAGGAAGGACTTCTTCACCTAAAACGTGCACGATTATTACAAGAAGCAGATTCAGTGCTGCACAGGACTAATCTTTTTACTGAAGAAGTGAAAGCAGAGCCTCTTGATCCCACAGATGTTGAACCAGAGCCACTGGAGGAAAATTGTTATTCTGTTGGATCTAAATGTAGATTTCATCACAAAGATGGGAGGTGGTACAATGGTCAAGTGGTGCAGTTGGATAACTCAGCAGCAAAGATTTCGTTCCTCACTCCTACATCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTACTAACTGTCGCCTATCACATGGAGTTGATGTTCAATTGTCCTCCCTGAAGAAATATGTCCCAACAATCTGGAAGTCATCCCTCATAGGATCGAGTATATGGGCAGTCTCAAATGCCAATGCAGGTATTTGGAGAGAAGCTGAGCTCGAGTCTTGGGATGAAAAATCTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCTGTGAAGCTTGGGGCAGAACATATGGTATTGTCAGAGTATGCAGAAATGAGCGATGTAGAGAGCGATTCCAGCATAGAACAATCTGACTCCAGCGACTATGAGGAAGAGGAGTCACAAGGTTTAGGATTTCTGGAGAGTACTAACAAACAAAGGGGCATTCAGACTGAAACCACTATATTTGCCAAGTGGGAGAACCACACTAGAGGCGTGGCTTCCAAAATGATGGCTAATATGGGTTTCCGAGAAGGAATGGGTTTAGGTGTAACTGGTCAGGGAATGCTAGATCCCATACCAGTGAAGGTCCTACCACCAAAGCAATCCTTAGATAATGCACTCAAGTCTCAGAAGGGAGAAGAGAACATAGAGAAACAAGGTAAGAAACGAAGCAGAGGAGGTAAGAAAAAACGCGATAAGAAATTCGCAGAAGCAAATCGCATGGCAAAAGAGGAAGAAGAATCAAGCTCAGATATCTTCTCACTAATAAATAACCAGCTGGCAATGCATGGTGAAGCTTTGAATGGCGGATCGATCAAGAAGCAGGGTTCCGGGGAAGGCAAGAAGGTGGATAGGCGCGCGTTGCTTGCATATGTGGACGAGGTGAAGGATTTGAAGATTAGGGTTGAAAAGCTTGAAGCAATGGTGAACATTAACAGAAAAGAGAAGGCTGTTTATGAGGCTGCTATGAGAAAATTAGTTGAAACTCGAAAGGCTTTAGCCGATGCTGAAGCAGCCCATGCCTCAGCATCGAATGCGGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG 1476 0.4431 MGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPSDPELLAVHEELVQAIKDAEEGLLHLKRARLLQEADSVLHRTNLFTEEVKAEPLDPTDVEPEPLEENCYSVGSKCRFHHKDGRWYNGQVVQLDNSAAKISFLTPTSENMLMCKFFLQQRCRFGTNCRLSHGVDVQLSSLKKYVPTIWKSSLIGSSIWAVSNANAGIWREAELESWDEKSGVGQVVFRDDGSSVKLGAEHMVLSEYAEMSDVESDSSIEQSDSSDYEEEESQGLGFLESTNKQRGIQTETTIFAKWENHTRGVASKMMANMGFREGMGLGVTGQGMLDPIPVKVLPPKQSLDNALKSQKGEENIEKQGKKRSRGGKKKRDKKFAEANRMAKEEEESSSDIFSLINNQLAMHGEALNGGSIKKQGSGEGKKVDRRALLAYVDEVKDLKIRVEKLEAMVNINRKEKAVYEAAMRKLVETRKALADAEAAHASASNAVVSKEKEKRWLKF* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0778 491 Gene3D - 119 178 - -
Dod05g0778 491 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 491 - -
Dod05g0778 491 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Dod05g0778 491 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Dod05g0778 491 Coils Coil 44 64 - -
Dod05g0778 491 MobiDBLite consensus disorder prediction 242 275 - -
Dod05g0778 491 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
Dod05g0778 491 MobiDBLite consensus disorder prediction 337 381 - -
Dod05g0778 491 Pfam G-patch domain 294 335 IPR000467 GO:0003676
Dod05g0778 491 Coils Coil 420 447 - -
Dod05g0778 491 MobiDBLite consensus disorder prediction 252 266 - -
Dod05g0778 491 Coils Coil 451 485 - -
Dod05g0778 491 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Dod05g0778 491 SMART G-patch_5 292 338 IPR000467 GO:0003676
Dod05g0778 491 MobiDBLite consensus disorder prediction 363 381 - -
Dod05g0778 491 Pfam CCCH-type zinc finger 146 166 IPR041367 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod05g0778 G-patch 9e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0778 - - gmx:100796284 756.133