Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0762 ATGTCACTTAACGCTCTCAAGGAAACTCTAAGACCTTGCACCACTGCCCAACAACACCCACCACCCTCAACTTCTTCTTCACAATCCATTTCCCAAAGCCAAACGCGCCCCAATTCGATCCTCCTTCACGATTCCCACACCCAATTCCTTAGAAAGCCCCCAAAATCCTCTCTTTCCCGGCAGCTTCGCCGTCTCCACGAGGAGGACACGCTTTCTTCCCCGCCCCTTCAGCCCCACAACAACAAACGAGAAAGAGAAAGGGAAGGAGAAGACGAAAGAGGTCAACGTAACAATGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGATAGAGGTGAAGAGGGGTAAATTCGGTAGAGCGAAAATTTCCCAGTTTCAATTTGATCACACTGGACCCTTTGAGCCTCTTGTCTTGTCTTCTGATGGAGAAGTTCCAGTTATTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAACATCAAAGAGTGGGAGTGAGATTTCTGTATGGTTTGTACAAGAACGATCATGGAGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTTCTGCCATCTTTGGTAAAGAAAGAGACTCTATGCTGAGTGAAAACTGGGAAGAGAAGAGAGAACCTGTGTTGATAATTTGCCCAACTTCTGTCATTCACAACTGGGAGAGTGAATTCTCTAAGTGGGCTAACTTCAGTGTTTCCATTTATCATGGTGCAAATCGGGATCTGATACATGATAAATTGGAAGCAAATGGAGTGGAGGTACTTATTACAAGTTTTGACACTTATAGGATTCATGGCACTTCTTTGTCAGATATCAAATGGGGCATTGTGATTATTGATGAGGCTCACCGGCTTAAGAATGAAAAATCAAAACTCTATAGAGCATGTTCAGAAATTAAAACCCTGAGACGTTATGGTCTTACTGGGACCATAATGCAAAATAAGATAATGGAGCTGTTTAATCTCTTTGACTGGGTAGCACCTGGCTCGCTTGGAACACGGGAGCACTTTCGTGAGTTCTATGATGAGCCGCTTAAGCATGGTCAGAGGTCAACTGCTCCTGACAGGTTTGTCCAAATTGCTAACAAGAGAAAACAACACCTTGTGACTGTTCTTCATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCCATGAGTGATTTGCAAAAACGTGCTTACAAGAGAATGTTACAGCTTCCTGACATCCAATGCCTTATAAATAAGGACTTGCCTTGTAGTTGTGGCAGCCCTCTTACCCAAGTTGAATGTTGTAAGAGGATAGTACCAAATGGAATTATTTGGCCTTACCTTCACAGAGATAACCCTGATGGTTGTGATTCATGCCCCTTTTGCCTTGTACTCCCATGCCTTGTCAAGCTTCAGCAGATAAGCAACCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAGCAAAGTAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATCGATTTGGTTGGTGGGAATGTTCAGAGTGAGAGTTTCATGGATCTAAGTGATGTGAAACATTGTGGAAAAATGCGAGCACTTGAAAAACTTCTATTCTCATGGATTTCACAGGGTGATAAAGTTCTTTTGTTTAGCTATTCAGTAAGGATGCTCGACATACTGGAGAAATTTCTCATACGGAAAGGCTACTGCTTCTCAAGACTGGATGGGTCAACTCCAACTAATTTACGTCAGTCTTTGGTTGACGATTTCAACTCAAGTCCAAGCAAACAAGTATTCCTGATATCAACTCGTGCTGGAGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCGCAGGACAGGTCCTTTCGCTTTGGACAGAAGCGGCATGTTGTGGTGTTCCGTCTTCTTGCAGCAGGTTCGCTTGAAGAACTTGTTTATTCTCGCCAGGTGTACAAGCAGCAGCTCTCAAACATTGCTGTCTCTGGAACGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGGGAGCTTTTTGGAATTAGCAATTTATTTCGAGATTTATCTGATAAGCTATTTACTAGTGAGATCATTGAATTGCACGAGATGGGAAAAGAACATGCGCATAAAATAGAGCAACCGGAAAAAATAAATCCAGCAGAAGAAACGGGTTCTTTAGTATCAGAGTCTGGAACTGAAATATGTGCTGAATCTATGAGGGCTGCTGTAAGTAAACCAGATCTTGAAGACCTTGGAATCGTGTATGCTCATCGCAATGAAGACATTGTGAACTTCCGACCTGGGATTGAAGGGAAGATGGATTCCAACATCTCTTCAAGTGATAGCTTAAGCAGGCCAAGCATCTCTTCAGTCCACCAAAGAAAGAAGCCAAATTCTGTGACTAAAATACAGAATGCAGCTTTCATTGATGAAAGGAAGAGAATCCAATATAGCCTCCTTGCACAGTATATGGGCATGGAAGAGCTTGCATTGAGCCGGTGGTTACTATCAGCTACCCCACTGGAGAGAGAGAAAGTGCTTCATGACTACAAGAAGAGGAGGAAGATTCCTAATGGTTGA 2691 0.4329 MSLNALKETLRPCTTAQQHPPPSTSSSQSISQSQTRPNSILLHDSHTQFLRKPPKSSLSRQLRRLHEEDTLSSPPLQPHNNKREREREGEDERGQRNNEEEEEEEEEEEIEVKRGKFGRAKISQFQFDHTGPFEPLVLSSDGEVPVIQVPASINCRLLEHQRVGVRFLYGLYKNDHGGILGDDMGLGKTIQAIAFLSAIFGKERDSMLSENWEEKREPVLIICPTSVIHNWESEFSKWANFSVSIYHGANRDLIHDKLEANGVEVLITSFDTYRIHGTSLSDIKWGIVIIDEAHRLKNEKSKLYRACSEIKTLRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVTVLHKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRAYKRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRIVPNGIIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGPDIDLVGGNVQSESFMDLSDVKHCGKMRALEKLLFSWISQGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGTMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIELHEMGKEHAHKIEQPEKINPAEETGSLVSESGTEICAESMRAAVSKPDLEDLGIVYAHRNEDIVNFRPGIEGKMDSNISSSDSLSRPSISSVHQRKKPNSVTKIQNAAFIDERKRIQYSLLAQYMGMEELALSRWLLSATPLEREKVLHDYKKRRKIPNG* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0762 896 PANTHER SNF2/RAD54 FAMILY MEMBER 25 883 - -
Dod05g0762 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 390 IPR027417 -
Dod05g0762 896 Gene3D - 402 755 IPR027417 -
Dod05g0762 896 Gene3D - 136 389 IPR038718 -
Dod05g0762 896 SMART ultradead3 153 348 IPR014001 -
Dod05g0762 896 MobiDBLite consensus disorder prediction 1 55 - -
Dod05g0762 896 CDD SF2_C_SNF 540 669 - -
Dod05g0762 896 SMART helicmild6 575 658 IPR001650 -
Dod05g0762 896 MobiDBLite consensus disorder prediction 811 835 - -
Dod05g0762 896 MobiDBLite consensus disorder prediction 95 109 - -
Dod05g0762 896 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 549 702 IPR001650 -
Dod05g0762 896 Pfam SNF2-related domain 174 430 IPR000330 GO:0005524|GO:0140658
Dod05g0762 896 Pfam Helicase conserved C-terminal domain 546 658 IPR001650 -
Dod05g0762 896 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 25 883 - -
Dod05g0762 896 MobiDBLite consensus disorder prediction 79 94 - -
Dod05g0762 896 MobiDBLite consensus disorder prediction 1 113 - -
Dod05g0762 896 Coils Coil 89 116 - -
Dod05g0762 896 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 286 295 IPR002464 -
Dod05g0762 896 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 169 340 IPR014001 -
Dod05g0762 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 713 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0762 Dod-Chr5 11887833 11895273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0762 547 688 RAD5 or RAD16-like Gene Family AT5G43530 39.437 5.33e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod05g0762 SNF2_N 1.1e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0762 K20098 - gmx:100781003 1405.19