Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0713 ATGGAATCGGATCTTGGAAAGCTCTTCATTGGAGGAATATCTTGGGACACCGATGAGGAACGTCTTAAGGAGTATTTTGGGAAGTATGGAGAGGTGATAGAGGCTGTGATCATGAGGGATCGTGCCACTGGCCGTGCTCGCGGTTTCGGTTTCATTGTCTTTGCTGATCCTGCTGTTGCTGAAAGGGTCATTGTGGAGAAGCACATAATCGATGGCCGCACCGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAACACTCGATAAATAGACAGTCCGGTAGTGTAAATGCGTCTCCTGGTCCTGGTCGCACGAAGAAGATTTTTGTTGGGGGTTTACCATCTACTATCACTGAAAGCGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACCGATGTTGTAGTAATGTATGATCACAATACCCAGAGGCCAAGAGGTTTTGGCTTCATCACATTTGATTTGGAAGAAGCTGTGGATAGAGTTCTGTATAAAACTTTTCATGAACTCAATGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCTGGTCCCAGCCGGAGCCCATTGATAGGATATAACTACGGTTTGAATAGGGCCAGTAGCTACCTAAACAGTTATGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTCAGGATGGATGGTAGGTTTAGTCCACTTACTAGTGGTAGAAGTGGTTTTACTCCATTTGGCAACACTGGCTATGGAATGGGAATGAATTTGGATTCCGGAATGAGCCCAGGCTATGGAGGGACATCTGGTTATGGGAGCAATTTAGGATATGGCCGAATATTTAGTCCTTTCTACAGCGGAAACTCGAACAGATATAACACTCCTATAGGCTATAGTGGGGGCAATAGCAGAAGTGATTCGCTTATGAACTCAACTTCTCGGAATGTCTGGGGAAATGGGGGCCTGAATAATGCCAATAACCCTGTCAGTCCCGGTTCTTTCTTGGGATCTGGAAGCGGGAGTTTTGGCGTTTCGATTGGAAATAGTGGCGCTAATTGGGGTCCCTCCATTCCAGCCCAAGGTGGAGGGGCCACTTCTGGCTATGCTACTGGGAGTAATGTTTATGAAGGTGGAGATAGCAGCTTCAGATTAGGTGGGGGAGGGTATGGAAGAAACAGCAGTACAGGTGTGACTCCATCCTCTACCTTTACTGCATCAACTGGAAGTTATGAAGGATCGTACGGGGATTTGTACCGCAGTGGCAGTGGTTCAGTTTACAATGACTCCGCTTGGCGGTCTGCTGCTTCTGAGATTGATGGTTCTGGGTCATTCAGTTATGGTCTTGGTGGCATAGCTTCAGATGACCCAGTAAAAAGTTCTGAGGGTTATATTGGAAGCTACAATGCTACAAGTAGACAATCTAATAGAGGAATTGCTGCCTAG 1440 0.459 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRATGRARGFGFIVFADPAVAERVIVEKHIIDGRTVEAKKAVPRDDQHSINRQSGSVNASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDLEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYGLNRASSYLNSYAQGYSMSPIGGYGVRMDGRFSPLTSGRSGFTPFGNTGYGMGMNLDSGMSPGYGGTSGYGSNLGYGRIFSPFYSGNSNRYNTPIGYSGGNSRSDSLMNSTSRNVWGNGGLNNANNPVSPGSFLGSGSGSFGVSIGNSGANWGPSIPAQGGGATSGYATGSNVYEGGDSSFRLGGGGYGRNSSTGVTPSSTFTASTGSYEGSYGDLYRSGSGSVYNDSAWRSAASEIDGSGSFSYGLGGIASDDPVKSSEGYIGSYNATSRQSNRGIAA* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0713 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Dod05g0713 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Dod05g0713 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Dod05g0713 479 Gene3D - 6 88 IPR012677 -
Dod05g0713 479 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Dod05g0713 479 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Dod05g0713 479 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 479 - -
Dod05g0713 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Dod05g0713 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 479 - -
Dod05g0713 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Dod05g0713 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Dod05g0713 479 MobiDBLite consensus disorder prediction 80 103 - -
Dod05g0713 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Dod05g0713 479 Gene3D - 103 189 IPR012677 -
Dod05g0713 479 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0713 Dod-Chr5 10938323 10942005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0713 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 25.281 1.70e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0713 K14411 - gmx:100805131 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0713 05 10938323 10942005 Dod05g0713 05 10938323 10942005 ECH
Dod05g0713 05 10938323 10942005 Dod08g0216 08 2506414 2509813 PCT