Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0708 ATGCAGACATCTCAGAATCATGAAATTTCCCATGGGTCCAACAGGTTCTACATTGACCCTGTGCAAAATCTGGAGCCACATTGTTTTCCGCCAAGTGAGAACCTAGACAATTACTCTTTCTCTGATAACAGCAGCCAAGCAACCTATCCTTCAGTCCAAATTTTAGAACCATATTCCACCCTTGAATCTGCTTCAACAAGCAGCAGTTTCCCTTGCCAAAATTCTCCATCTGCTGCCAGCTTCTCACCTAACAATAGTCCAGTGTCAAAGCTAGAGTCAAAATCATATGTGTTAAGGCCACAGCATTCTCTCGAAACTATTAGTGGCTCTCCTCAGAATGATTATTGCTTGACGCATGGCCTTGACGGCCTGAAGCATAAGATAAGAGAGCTTGAAACAGTTATGTTGGGACCTGATGCAGATATACTAGATATATATGATACCGTAGTTCCTGAAGAATCTGATTCATTTTTGTTGGAGGCGGAGAAGTGGAAGAAAATGATGGAAACCATATCTAGAGGCGACTTGAAGGAGATGCTTTACACTTGTGCAAAAGCGATGGTGGCGAATGACATGGAGACTACAGAATGGCTGATGTCTGAATTGCGCAAAATGGTGTCCATTTCAGGCAACCCTCTCCAACGATTGGGAGCATACGCGATGGAGGCCCTTGTTGCAAGGATGGCCTCTTCAGGAAGCACAATCTACAAGGCCTTAAAATGTGCTGAGCCAACTGGTAATGAACTCCTTTCGTACATGCATGTACTTTATGAAATATGCCCATACTTCAAGTTTGGGTATATGTCGGCAAATGGAGCAATTGCTGAAGCTATGAAGGAGGAAAGTCATGTCCACATAATTGATTTTCAGATTAACCAGGGAACTCAATATGTAAGCCTAATCCAGGCTCTTGCTCGCCGGCCTGGAGGGTCCCCTAGGATCAGAATAACAGGTGTTGATGACTCCATTTCGGCTTATGCCAGGGGAGGGGGGCTTGACATTGTTGGAAAAAGGCTATCAGCACTTGCACAGTCGTGCAGTGTACCTTTTGAGTTCCATGCTGTCAGAGTTCCTGTTTCTGAGGTGCAACTTGAACACCTTGAAATTCAGCCTTACGAAGCTGTGGCTGTGAATTTTGCCATTACACTGCACCATGTGCCAGATGAAAGTGTGAACAGTCAGAATCCTCGGGACCGGTTGTTGAGATTGGCAAAGCACTTGTCTCCTAAGGTAGTGACTCTTGTTGAGCAAGAACTTGATACCAATAATGCGCCGTTCCTACCGCGTGTCATGGAGACATTGAACTACTACTTGGCTGTTTTCGAATCAATCGATGTGGTTCTGCCAAGGGAGAACAAAGAGAGGATCAATGTTGAGCAGCATTGCTTGGCTCGAGAGGTTGTCAACTTGATAGCATGTGAAGGTGCAGAAAGAGTGGAACGGCACGAGCTTCTAAAGAATTGGAGGATGCGTTTCACAAGGGCTGGATTTACACCTTATCCGCTGAGCTCCTTCATTAATGCTTCGATCAAGGACCTTTTGGAGAGCTACCGCGGGCATTACACTCTTGAAGAGAGAGATGGTGTACTATATCTTGGGTGGATGAATCAGCTTCTTATTGCCTCTTGTGCTTGGAGATGA 1641 0.4528 MQTSQNHEISHGSNRFYIDPVQNLEPHCFPPSENLDNYSFSDNSSQATYPSVQILEPYSTLESASTSSSFPCQNSPSAASFSPNNSPVSKLESKSYVLRPQHSLETISGSPQNDYCLTHGLDGLKHKIRELETVMLGPDADILDIYDTVVPEESDSFLLEAEKWKKMMETISRGDLKEMLYTCAKAMVANDMETTEWLMSELRKMVSISGNPLQRLGAYAMEALVARMASSGSTIYKALKCAEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKEESHVHIIDFQINQGTQYVSLIQALARRPGGSPRIRITGVDDSISAYARGGGLDIVGKRLSALAQSCSVPFEFHAVRVPVSEVQLEHLEIQPYEAVAVNFAITLHHVPDESVNSQNPRDRLLRLAKHLSPKVVTLVEQELDTNNAPFLPRVMETLNYYLAVFESIDVVLPRENKERINVEQHCLAREVVNLIACEGAERVERHELLKNWRMRFTRAGFTPYPLSSFINASIKDLLESYRGHYTLEERDGVLYLGWMNQLLIASCAWR* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0708 546 MobiDBLite consensus disorder prediction 65 86 - -
Dod05g0708 546 ProSiteProfiles GRAS family profile. 167 546 IPR005202 -
Dod05g0708 546 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 17 545 - -
Dod05g0708 546 Pfam GRAS domain family 176 546 IPR005202 -
Dod05g0708 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 545 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0708 Dod-Chr5 10873084 10876526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0708 1 546 GRAS Transcription Factor Family AT1G50600 55.717 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dod05g0708 GRAS 2.6e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0708 - - gmx:100785400 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0708 05 10873084 10876526 Dod05g0708 05 10873084 10876526 ECH
Dod05g0708 05 10873084 10876526 Dod08g0210 08 2441743 2446427 PCT