Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0661 ATGAATACTGCATGCCCTTCAGAGTTTTCAAGCAGCATGGTTTCAATCCCTTCAAGTTCTGAATCATCAGGAGAAGAAAGAATGATGGCCACCAGTGCACAAAACAGGCCTTCTTTTTTTACTAGGGTGGCCATGAGAATATCTAGAGCAAGATGGTTCACTTTTCTGAGAAGAGTGTTCCATTACCAAAATGGAACAGGATCTGATCTTGGCTCTAACCCTTTTAATTCAAGCACTTGGATGATGCTGGAGTTGGTTGCATTGGTGGTTCAGATAACAAGCACAACATTCACTTTGGCAATTTCAGAGACTGAGAGGCCAATTTGGCCTATGAGGATATGGATAGCAGGCTATGATATTGGGTGTGTCCTTAATCTGCTGCTACTTTGTGGCCGCTACCATCAACTTCATGTGACTCAGGGAGATGCTCTTAGCCTTTCTGATATGGAGCAGCAGAGAAACAATGTAGAAACAAGGCACTCACATTTGATGAATAGATGCCGGAGTTCACTAGAGCTTTTCTTTGCCATGTGGTTTGTGATGGGCAACGTTTGGGCTTTTGACTCACGTTTTGGCTCTAATTTCCAGCAAGCCCCAAAGCTCAATGTGCTATGCATCATCCTTCTTGCTTGGAATGCAATCTGCTACTCTTTCCCTTTTCTACTGTTTTTGTTGCTTTGTTGCTGTGTGCCACTCATTAGCACCCTCCTTGGATACAACATGAACATGGGGTCCACTGCTAGAGGTGCATCTGATGATCAAATTTCACAACTTCAAAGTTGGAGATATAAACAAGCCCATACCCAGTTGGAGCATGGCAGTGACTCTGAAACAAGTCAAAGATTGATCAATGAGGATCCAGAATGTTGCATTTGCTTGGCCAAGTACAAAGACAAAGAAGAAGTTAGGCAATTGCCCTGTTCCCATATGTTCCACCTAAAATGTGTGGATCAATGGCTAAGAATTATTTCATGCTGTCCACTTTGTAAACAAGGATTACAAAGGTAG 1008 0.4276 MNTACPSEFSSSMVSIPSSSESSGEERMMATSAQNRPSFFTRVAMRISRARWFTFLRRVFHYQNGTGSDLGSNPFNSSTWMMLELVALVVQITSTTFTLAISETERPIWPMRIWIAGYDIGCVLNLLLLCGRYHQLHVTQGDALSLSDMEQQRNNVETRHSHLMNRCRSSLELFFAMWFVMGNVWAFDSRFGSNFQQAPKLNVLCIILLAWNAICYSFPFLLFLLLCCCVPLISTLLGYNMNMGSTARGASDDQISQLQSWRYKQAHTQLEHGSDSETSQRLINEDPECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLRIISCCPLCKQGLQR* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0661 335 CDD RING-H2_RNF111_like 287 330 - -
Dod05g0661 335 SMART ring_2 289 329 IPR001841 -
Dod05g0661 335 Pfam RING-like zinc finger 288 316 IPR001841 -
Dod05g0661 335 Coils Coil 146 166 - -
Dod05g0661 335 MobiDBLite consensus disorder prediction 1 31 - -
Dod05g0661 335 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 334 - -
Dod05g0661 335 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 334 - -
Dod05g0661 335 SUPERFAMILY RING/U-box 279 333 - -
Dod05g0661 335 ProSiteProfiles Zinc finger RING-type profile. 289 330 IPR001841 -
Dod05g0661 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 334 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0661 Dod-Chr5 9822764 9825732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0661 39 333 C3H Transcription Factor Family AT4G26580 69.024 6.50e-144 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0661 - - gmx:100818715 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0661 05 9822764 9825732 Dod05g0661 05 9822764 9825732 ECH