Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0647 ATGGATAGTAAAGCAGCTGTAGACTTAATGGAGTCTTCTTCTGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGCTGGCACAGAACAACCAACAACATCGGCTACTGACATGTATAAACAGCCTTTTGTCATAGGTGTTGCTGGTGGTGCAGCATCTGGCAAGACAGCAGTCTGTGATATGATTATTCAGCAGCTTCATGATCAAAGAGTTGCATTGGTTAATCAGGATTCTTTTTACAATAACTTGACTGAGGAGGAGCATACTCGAGTACAGGATTACAACTTTGATCATCCTGATGCTTTTGATACTGAGCAGTTGCTGTGTGTTATGGACAAGTTGAAGCGTGGTGAAGCAGTAGATATTCCTAAATATGATTTTAAGAGTTACAAGAGTGATATGTTTCCAAAAAGAAGGGTAAACCCTTCATATGTTATAATTTTGGAGGGCATCCTTGTTTTCCATGATCCACGTGTACGGGAGTTGATGAATATGAAGATATTTGTTGATACAGATGCGGATGTTCGTTTGGCAAGAAGGATTAGGCGTGATACCGGTGAGAAGGGTCGGGATATCGCAGTAATTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCATTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTCTGTAAAATATATTCAAATTTATATGTTATTCAGTCAACTTTTCAGATACGGGGTATGCATACCTTGATACGAGATGCTCACACAACCAAGCATGATTTTGTATTTTATTCTGATCGCTTGATTCGTTTAGTCGTCGAACATGGCTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCGACTGGTTCTGTATACACTGGTGTGGATTTCTGCAAGAGGTTGTGTGGTGTCTCTGTCATCAGGAGTGGGGAGAGTATGGAGAACGCTTTACGAGCATGCTGTAAAGGTATCAAGATTGGTAAAATTCTGATTCATAGGGAAGGTGACAACGGTCAGCAGCTAATATATGAAAAGCTTCCAAACGATATCTCGGATAGGCATGTGCTACTGTTGGATCCTATCCTTGGCACAGGTAATTCGGCTGTTCAAGCAATTTCTTTAATCATAAAAAAGGGCGTACCAGAGTCCAACATTATATTTCTCAATCTCATATCTGCACCTCAAGGTGTGCATGTGGTCTGCAAAAGATTTCCAAGAATAAAAATAGTGACGTCCGAGATTGAGATTGGTTTGAATAAAGATTATCGTGTCATACCGGGCATGGGCGAGTTCGGCGATCGGTACTTTGGAACTGATGACGACGAGCAGGTGGTGGCTCCTTTGCAGTAG 1434 0.4107 MDSKAAVDLMESSSEVHFSGFHMDGFEQRKAGTEQPTTSATDMYKQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVALVNQDSFYNNLTEEEHTRVQDYNFDHPDAFDTEQLLCVMDKLKRGEAVDIPKYDFKSYKSDMFPKRRVNPSYVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTGEKGRDIAVILDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYSNLYVIQSTFQIRGMHTLIRDAHTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLIIKKGVPESNIIFLNLISAPQGVHVVCKRFPRIKIVTSEIEIGLNKDYRVIPGMGEFGDRYFGTDDDEQVVAPLQ* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0647 477 SUPERFAMILY PRTase-like 250 467 IPR029057 -
Dod05g0647 477 Gene3D - 251 466 IPR029057 -
Dod05g0647 477 CDD UMPK 49 247 IPR000764 -
Dod05g0647 477 Gene3D - 43 250 IPR027417 -
Dod05g0647 477 PANTHER URIDINE KINASE 15 468 - -
Dod05g0647 477 CDD PRTases_typeI 324 439 IPR000836 -
Dod05g0647 477 Pfam Uracil phosphoribosyltransferase 265 466 - -
Dod05g0647 477 TIGRFAM udk: uridine kinase 46 247 IPR000764 -
Dod05g0647 477 PRINTS Uridine kinase signature 77 88 - -
Dod05g0647 477 PRINTS Uridine kinase signature 47 64 - -
Dod05g0647 477 PRINTS Uridine kinase signature 179 189 - -
Dod05g0647 477 PRINTS Uridine kinase signature 193 204 - -
Dod05g0647 477 PRINTS Uridine kinase signature 122 137 - -
Dod05g0647 477 PRINTS Uridine kinase signature 215 228 - -
Dod05g0647 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 240 IPR027417 -
Dod05g0647 477 Pfam Phosphoribulokinase / Uridine kinase family 49 235 IPR006083 GO:0005524|GO:0016301
Dod05g0647 477 PANTHER URIDINE KINASE 15 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0647 Dod-Chr5 9676070 9684082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0647 1 469 PRT Gene Family AT4G26510 81.953 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0647 K00876 - gmx:100527893 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0647 05 9676070 9684082 Dod05g0647 05 9676070 9684082 ECH
Dod05g0647 05 9676070 9684082 Dod08g0130 08 1503036 1508818 PCT