Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0618 ATGGGGCGCATTCCATGCTGTGAGAAGGACAACGTGAAAAGAGGACAGTGGACTCCTGAGGAAGACAACAAGCTCTCCTCCTACATTGCCCAACATGGGACCCGCAACTGGCGCCTTATCCCCAAGAATGCTGGTCTCCAGAGATGTGGAAAGAGCTGCAGGCTAAGGTGGACTAACTACCTTCGTCCTGATCTCAAACATGGCCAATTCTCTGATTCAGAAGAGCAAACCATTGTGAAGCTTCACTCAGTTTTTGGAAACAGGTGGTCACTGATAGCAGCCCAGCTTCCAGGGCGCACTGATAATGATGTCAAAAACCACTGGAACACCAAGCTGAAGAAGAAACTTTCAGGCATGGGTATTGACCCTGTAACCCACAAGCCATTCTCACATCTAATGGCTGAAATTGCTACAACATTGGCACCACCTCAGGCAGCACACCTGGCTGAAGCAGCACTCGGCTGCTTCAAAGATGAGGTCCTCCACCTTCTGACCAAGAAGCCAATTAACTTCCAAGGCCAGCATTCCAATGTAGCACCAGGGAATAACATTACAGATTACATTAACTGCAAGCCAGAAGAGAAAGATGACACTGTTGAGAAGATTGAGCTTGGCCTCTCAAAGGCCATGCAAGAAGAACCTGAAATGATACCTAACAAACCTTGGGACTCCACTGCAGCTACATCTGCAAATTATGCTACGCCATACAGTGTTTTCCCTACAATGCAAGGGTTTCAATTCAATCCAGCATCTTTTGGCAGTAAGGGGGATGCATCACCATGGAGCCAGAGTATATGTACAGGAAGCACATGCACGGCCTTGGATCAGCAAAACCAGTTACATGAAAAGCTTGAAGAAAATGGGGATGATTCCGAGGCCACAAAAGAGATTAGAAATCTTCGCAATATATTCAACTCAGACTGTGTCTTGTGGGATTTACCAGCAGATGATTTAATTAACCCCATGGTATAA 972 0.465 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDSEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKPINFQGQHSNVAPGNNITDYINCKPEEKDDTVEKIELGLSKAMQEEPEMIPNKPWDSTAATSANYATPYSVFPTMQGFQFNPASFGSKGDASPWSQSICTGSTCTALDQQNQLHEKLEENGDDSEATKEIRNLRNIFNSDCVLWDLPADDLINPMV* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0618 323 Coils Coil 274 294 - -
Dod05g0618 323 PANTHER TRANSCRIPTION FACTOR MYB80 1 323 - -
Dod05g0618 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod05g0618 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Dod05g0618 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod05g0618 323 Gene3D - 14 66 - -
Dod05g0618 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Dod05g0618 323 PANTHER F14D16.11-RELATED 1 323 - -
Dod05g0618 323 CDD SANT 70 112 IPR001005 -
Dod05g0618 323 CDD SANT 17 61 IPR001005 -
Dod05g0618 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod05g0618 323 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Dod05g0618 323 SMART sant 13 63 IPR001005 -
Dod05g0618 323 SMART sant 66 114 IPR001005 -
Dod05g0618 323 Gene3D - 69 128 - -
Dod05g0618 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0618 Dod-Chr5 9272727 9274079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0618 1 323 MYB Transcription Factor Family AT5G56110 57.704 2.88e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod05g0618 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0618 K09422 - gmx:100800764 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0618 05 9272727 9274079 Dod05g0618 05 9272727 9274079 ECH