Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0610 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGGTCCGCATTCCTTTCAACCTAGCAGTGTCTATACTGAGCCTTGGTGGCGAGGTGTTGGTTATAGTACTGTCCCTCAAGTAATGGCTGGGGCAAATGCATCCAATTCATCCTCTCTTGAATGCCCTAATGGTGATTCAGAATCCAATGAAGAGGGCCACTCTTTGTCCAATAGTGGGATGAACGAGGAAGATGATGATGCTGCCAAGGATTCACAGGCTGCTGATCCTAATCAATCAGGAAATTATGGGCAAGAACACCAAGGGATTCAGCATGCTGCACCTTCCATGCGCGATGAAGGCCTTACTCAGGCTCCACAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCATACTATGGGGGCATGATGGCAGCTTATGGACCCCAGCCGTTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCTCTTGAGATGGCACAAGAGCCTGTTTATGTGAATGCTAAACAATACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCAAAAGCAGAGCTTGAAAAGAAGCTGATAAAAGCTAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGGGCAAGGGGTAGCGGAGGACGTTTTGCTAAGAAATCTGGTGGTGAGGGCTCAAACAACTCAGGCAAGGACAAAGATAGTTCCGGTCCAGTTTCATCTGGTTCTGAACCTTTACCTTCCGACTCTACCGAGACTTGGAATTCTCCCAATATGCCCAAATACGAGAATGGTAGTGGCTCCTACCATAATCACAATGGTCTGCAATCTTCAACCTATCATTTGCACTCAGGTGAAAGAGTTGACGAAGGGGATTGTTCCGGTCAGCAACGAGGAAGCATCACTTCTGAGCGCACATCACAGAGGCGCCTCGCTATTCAGTAG 978 0.4744 MQSKSETANRLRSGPHSFQPSSVYTEPWWRGVGYSTVPQVMAGANASNSSSLECPNGDSESNEEGHSLSNSGMNEEDDDAAKDSQAADPNQSGNYGQEHQGIQHAAPSMRDEGLTQAPQLELVGHSIACATNPYQDPYYGGMMAAYGPQPLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKARKPYLHESRHQHAMRRARGSGGRFAKKSGGEGSNNSGKDKDSSGPVSSGSEPLPSDSTETWNSPNMPKYENGSGSYHNHNGLQSSTYHLHSGERVDEGDCSGQQRGSITSERTSQRRLAIQ* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0610 325 MobiDBLite consensus disorder prediction 45 69 - -
Dod05g0610 325 MobiDBLite consensus disorder prediction 306 325 - -
Dod05g0610 325 MobiDBLite consensus disorder prediction 1 25 - -
Dod05g0610 325 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Dod05g0610 325 MobiDBLite consensus disorder prediction 233 293 - -
Dod05g0610 325 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Dod05g0610 325 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Dod05g0610 325 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 316 IPR001289 GO:0003700|GO:0006355
Dod05g0610 325 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 316 - -
Dod05g0610 325 MobiDBLite consensus disorder prediction 1 24 - -
Dod05g0610 325 MobiDBLite consensus disorder prediction 206 325 - -
Dod05g0610 325 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Dod05g0610 325 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Dod05g0610 325 MobiDBLite consensus disorder prediction 206 226 - -
Dod05g0610 325 MobiDBLite consensus disorder prediction 85 101 - -
Dod05g0610 325 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Dod05g0610 325 MobiDBLite consensus disorder prediction 45 110 - -
Dod05g0610 325 MobiDBLite consensus disorder prediction 70 84 - -
Dod05g0610 325 Gene3D - 171 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0610 Dod-Chr5 9176103 9180452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0610 16 271 CCAAT-HAP2 Transcription Factor Family AT5G12840 56.757 4.55e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dod05g0610 CBFB_NFYA 4.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0610 K08064 - gmx:100808378 496.123