Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0580 ATGAGTGCTGATTTTTTTTTTTGGCTACCTGAATTGTTGCAGATGTCATATTCCAAGAGATCAAGGTATTCTCCTTCTCCTTCCCCATATTACAAGCGGTACAGTAGGTCTGTGTCCCGCTCTCTCTCAAGGTCGAGATCCAGAAGCCAATCAAGGAGTGTTTCAAGTGATGCAGAAAACCCTGGAAATAACTTGTATGTGACTGGACTGTCTCCTAGGATAACCAAGAGAGAACTGGAGAAGCATTTTGCAGCTGAGGGACAAGTCATAGATGTACATCTTGTTGTTGATCCATGGACTAGGGAATCCCGTGGTTTTGGCTTTGTGACAATGGAGACTCTTGAGGATGCTGATCGATGTGTGAAGTACCTGAACCGCTCTGTACTCGAAGGGCGTGTCATCACGGTGGAGAAGGCTAGAAGGCGACGCGGTCGAACCCCGACGCCTGGGAAGTATCTAGGGCTGAGGACTGTACGCGCACGTCGTCGATCTGCGAGCTCCTCTCCTCGTCGCTCCCCTAGTTATTCTCCCTACAGAAGAAGCTATAGTCGTTCACCATATTCAGACCGTAGCAGGAGTCGCTCTTATTCTCCTGACTACCGCCGAAGGAGGTCATACTCTCCGTATTACAGTCACAGGTCATATTCTCCATACTACAGTCGGCGCAGGTCATATTCCCGTTATGAACGGCGAAGATCATATTCTCGTTATAATCGACGTAGGTCATATTCTCGGTCTCGTTCTCCATACAGCAGGTCACCTGTCACTTACCGCGACAGATCATACTCTCCCTATGACTCGAGATATGACTCACCTGACGATTGCTACTACAGAAGGCACTCGAGATATGACTCACCTGATGATCGCTACTACAGAAGGCACCGATACAGGTCAGTTTCACGAAGCATCTCACCCCAACCTAGGAGAAGGCCAAGAAGGAGCTACTCCCGGAGTGTTACCCCTGTTCGAATAAGGAGCTATTCTCGAAGCGTCTCCCCCAGGCGCAGGAGGAGCTACTCACGAAGTGTTTCTCCCAAGCCAAGGAAGAGTTCTGGGAGGAGTCATTCAAGAAGCTCTAGGAGGAGTGGTGGTTATTCAAAACGTAGGTATTCAAGAAGCCCAAGTGTGAGTGCTAGTTCAAGATCAGTATCAAGGTCCAACACTCCTAGATCTGCATCTCCTTCTACTTGA 1191 0.4887 MSADFFFWLPELLQMSYSKRSRYSPSPSPYYKRYSRSVSRSLSRSRSRSQSRSVSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGQVIDVHLVVDPWTRESRGFGFVTMETLEDADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGKYLGLRTVRARRRSASSSPRRSPSYSPYRRSYSRSPYSDRSRSRSYSPDYRRRRSYSPYYSHRSYSPYYSRRRSYSRYERRRSYSRYNRRRSYSRSRSPYSRSPVTYRDRSYSPYDSRYDSPDDCYYRRHSRYDSPDDRYYRRHRYRSVSRSISPQPRRRPRRSYSRSVTPVRIRSYSRSVSPRRRRSYSRSVSPKPRKSSGRSHSRSSRRSGGYSKRRYSRSPSVSASSRSVSRSNTPRSASPST* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0580 396 CDD RRM_RBMX_like 62 139 - -
Dod05g0580 396 MobiDBLite consensus disorder prediction 225 246 - -
Dod05g0580 396 MobiDBLite consensus disorder prediction 329 367 - -
Dod05g0580 396 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 22 298 - -
Dod05g0580 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Dod05g0580 396 MobiDBLite consensus disorder prediction 139 396 - -
Dod05g0580 396 Gene3D - 16 147 IPR012677 -
Dod05g0580 396 SUPERFAMILY RNA-binding domain, RBD 52 167 IPR035979 GO:0003676
Dod05g0580 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Dod05g0580 396 MobiDBLite consensus disorder prediction 167 193 - -
Dod05g0580 396 MobiDBLite consensus disorder prediction 20 67 - -
Dod05g0580 396 PANTHER TRANSFORMER-2-RELATED 22 298 - -
Dod05g0580 396 MobiDBLite consensus disorder prediction 263 294 - -
Dod05g0580 396 MobiDBLite consensus disorder prediction 368 396 - -
Dod05g0580 396 SMART rrm1_1 64 137 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0580 Dod-Chr5 8400257 8404244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0580 64 168 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 1.40e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0580 - - gmx:100805126 208.764