Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0560 ATGGATCAACCGCTTAATGTGGAACTCTACACCAACAACAACATATGGCAACTATTGCCAACTTCTTCAACAAGTTCTTCTCCCTCTTCATCATCCTGCTTGTCCACCTTGGCTGCTTCATCTTCACCACCAACACCACAGCAAAGCAAGAACACCACCACGACCAGCAACAACAACCACTTGACACCACCATCATCAAAGAAACGCAAAATCTCACCTTTATCCCAACCCTCATCCCCTTCCCACCCCAAATTCAAAACCCACAGAGCCCTCTCCTCTTCTTGGCATTTCATCAAGCACCTCTTCTCCACCAAACCCAAAACCACCACCACCACCACCACCACCCATTCCTCACCCCAATCCACCACCACAACCACAACCACCACCACCGTCACCACCGCCACCAAACTCTCTCAGATCTCCCTCCTCTCCCAACCCGACCCGAACCTCCCGGACCCACCGCCGCGAAAACCAACCCGACCAGAATCCGACATAACCTCCGACGACACGAACCTCTTCTTCCCTCTCCGGAACGACATCTTCCCATGCACCGCGTGCGGCGAGATCTTCCAGAAGCCAATCCTACTGGAAAACCACCAATCCTCCAAACACGCGGTTTCGGAGCTACCCGGATCCGACCCAGGTCACAACATAGTCCAAATCATCTTCAAATCGGGTTGGCCCGGGACCCGAAACTTCCCGAATATAACCCGAATCCTCAAGATCCACAACAGCCAGAAGATCCTCTCCCGGTTCGAGGAGTACCGCGAGAGCGTGAAGTCGAGGGCGGCGCGTCACCTCACGCGCCGCCGCGACGAGCGGTGCGTGGCCGACGGGAACGAGCTCATGCGGTTCCACTGTTCGACTTTCTTATGCGATTTGGGACTCAACGGGGATTCTACGATTTGTTCGCAGCAATTCTGTAATATTTGTGGGATTATTAAATCGGGATTTTCGCCGAAATTGGATGGGATTTCCACGCTGGCGTCCAGCTGGAGGGCACACGTGTCGATCCCTGAGGACATGGAGAGCGAGTTTAGGTTTATGAATGTGAAGCGGGCAATGCTTGTGTGCCGGGTGATCGCGGGTCGGGTTGGTTCGGATTTGGACGAGGCTGAGAAGGGGGAGGATGGCGGCGGGTTCGATTCGGTGATGGTGCGTGGTGGCGGCGGCGGCAGTGGGGTGTACACGCGGCTTGATGAGGAGGAGCTTTTGGTTTTTAATCCTAGGGCTGTGCTTCCTTGTTTTGTGATTGTGTATAGTGCTTGA 1269 0.5437 MDQPLNVELYTNNNIWQLLPTSSTSSSPSSSSCLSTLAASSSPPTPQQSKNTTTTSNNNHLTPPSSKKRKISPLSQPSSPSHPKFKTHRALSSSWHFIKHLFSTKPKTTTTTTTTHSSPQSTTTTTTTTTVTTATKLSQISLLSQPDPNLPDPPPRKPTRPESDITSDDTNLFFPLRNDIFPCTACGEIFQKPILLENHQSSKHAVSELPGSDPGHNIVQIIFKSGWPGTRNFPNITRILKIHNSQKILSRFEEYRESVKSRAARHLTRRRDERCVADGNELMRFHCSTFLCDLGLNGDSTICSQQFCNICGIIKSGFSPKLDGISTLASSWRAHVSIPEDMESEFRFMNVKRAMLVCRVIAGRVGSDLDEAEKGEDGGGFDSVMVRGGGGGSGVYTRLDEEELLVFNPRAVLPCFVIVYSA* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0560 422 MobiDBLite consensus disorder prediction 21 87 - -
Dod05g0560 422 SUPERFAMILY ADP-ribosylation 206 421 - -
Dod05g0560 422 MobiDBLite consensus disorder prediction 107 146 - -
Dod05g0560 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 209 IPR013087 -
Dod05g0560 422 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 56 421 - -
Dod05g0560 422 PANTHER NUCLEIC ACID BINDING PROTEIN 56 421 - -
Dod05g0560 422 MobiDBLite consensus disorder prediction 107 170 - -
Dod05g0560 422 ProSitePatterns Zinc finger C2H2 type domain signature. 183 204 IPR013087 -
Dod05g0560 422 Gene3D - 206 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0560 Dod-Chr5 8169940 8173812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0560 95 422 C2H2 Transcription Factor Family AT2G29660 54.464 7.32e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod05g0560 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0560 - - aip:107608029 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0560 05 8169940 8173812 Dod05g0560 05 8169940 8173812 ECH