Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0558 ATGAAACCCATGGGAGATAGTGGTAGTGGAAATGGTAATGGTGATTATGCCATTCCATTTCATGGGTGTGGTGAAAATATGAAGGTCACCAATAATAACCCTTCTATGTGTAAATCAGGCCCTCCTTTAGCAGCCATAGATAGGTTCTTATGGGGCCAACAACATAGCCACTTCCCTCAAAAGCAACACCAACATCAACAACAACATAACAATGATGTTGCAAAGATTAATAGCCATTCAAGTGTTTTTGATGAAGAGTTCTGCAGGTTTGCTTGTTCTAGGTTTGTGTGGCCTAATGGTTACACTCAAGAAGCAAGCCTTGTTGATCAGCTTTTGGCAAATGAAGAGGCTCTCAATTGGGCACACCAAGCCCCTGCATCGAAAGATGATGTGCAAGTTTTAGGGAAGAATGTGAATGTCGTGGGAAGGAAACCTAAGAAAGGGTCTTTAGTGTCTTTGATCAAAGGGCAGTGGACTGAAGAGGAAGACAAGAAATTGTTAAGGTTGGTGAAGCAACATGGTGTGAAAAAATGGTCTCAAATAGCTGAGAAGTTGGAGGGAAGGGCTGGCAAGCAGTGTAGAGAGAGATGGCACAATCATCTGCGGCCAGATATCAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGGATACTAGTGGAAACCCATGCCAAGGTTGGAAACCGTTGGGCAGAGATAGCAAAGTGCATTCCAGGAAGAACAGAGAATGCTATAAAGAACCATTGGAATGCCACAAAAAGGAGGCTGAATTCAAAGAGAAAGAACAAGAGGCCACAAAGCTCAAATGGGAAGCCCCAGCCCTCAATTCTCCAGGACTACATAAGAGGCAAGGCCATTGGTAGCACCATCACTAATTCCACACCTACAACAACAACAGCAACAAAAACTATCACTACTATCACTACTACTCCTTCTAGCTCTACCACAGCAATACCTGAATCTATCACCAATAATTATAACAGTGACAATATTAATAATCCCTCATCACCAATCATAGCTGAAACTTATGATGATGAGTTGCTCTTCTTGCAACAACTTTTCAAGGAGAATCATCAGACCCATCATCACCAGCTGCCAATTGTTAGTGCTGAAGATGTTAAGCAAAATAAGAATTCTTCAATCTCCAATAATTATTACTCCTTGGGTCAGATGCTCACTGATGTGAATGAGTGTGGTCGTTTTGGTCATTCCAATGATGCAAGTACATATAACATGTACTTGGATGAGAGTACTCTCAATGTTCCTAGAAAGATAGCTCATCATCATGAACACAACACCCCCATCATCAATTACCATGATTCTGATCTCTATCTCTCTAGGTTGATGAATGTGAATAGTGGTGCTGCTAGTTCTTCATCAAATTGCTATGATCATGGTGGGAATCAGAACATGGATTTTCAGCTGGGGGTTCAAGATTGTTCAGTTGGAAAAAGGGAGATGGATTTGATAGAGTTGATCCAGCTTCCCCACCCACCAAGTATGATACCAATAACTTTTGATATCTTTCCAAATGCCACCTTTGCCCCAACTCTTGACCATGATGAAGGTGGTGGGGAAGTAGCCGCAGTAGCTAACTCATCGGTGGTGAGATCCGCTAGAGCTCATGTCACAGCTGGCGGTCGCAATCCATTGGATGACGTGGAGGCACAGACCAAGCTAGCAAATGCGAGACACCATTGA 1698 0.427 MKPMGDSGSGNGNGDYAIPFHGCGENMKVTNNNPSMCKSGPPLAAIDRFLWGQQHSHFPQKQHQHQQQHNNDVAKINSHSSVFDEEFCRFACSRFVWPNGYTQEASLVDQLLANEEALNWAHQAPASKDDVQVLGKNVNVVGRKPKKGSLVSLIKGQWTEEEDKKLLRLVKQHGVKKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVETHAKVGNRWAEIAKCIPGRTENAIKNHWNATKRRLNSKRKNKRPQSSNGKPQPSILQDYIRGKAIGSTITNSTPTTTTATKTITTITTTPSSSTTAIPESITNNYNSDNINNPSSPIIAETYDDELLFLQQLFKENHQTHHHQLPIVSAEDVKQNKNSSISNNYYSLGQMLTDVNECGRFGHSNDASTYNMYLDESTLNVPRKIAHHHEHNTPIINYHDSDLYLSRLMNVNSGAASSSSNCYDHGGNQNMDFQLGVQDCSVGKREMDLIELIQLPHPPSMIPITFDIFPNATFAPTLDHDEGGGEVAAVANSSVVRSARAHVTAGGRNPLDDVEAQTKLANARHH* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0558 565 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 256 IPR017930 -
Dod05g0558 565 CDD SANT 158 201 IPR001005 -
Dod05g0558 565 PANTHER MYB DOMAIN PROTEIN 64-RELATED 151 357 - -
Dod05g0558 565 SMART sant 154 203 IPR001005 -
Dod05g0558 565 SMART sant 206 254 IPR001005 -
Dod05g0558 565 Gene3D - 154 206 - -
Dod05g0558 565 MobiDBLite consensus disorder prediction 251 265 - -
Dod05g0558 565 Pfam Myb-like DNA-binding domain 158 215 - -
Dod05g0558 565 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 150 205 IPR017930 -
Dod05g0558 565 Gene3D - 209 274 - -
Dod05g0558 565 CDD SANT 209 252 IPR001005 -
Dod05g0558 565 PANTHER MYB PROTEIN-RELATED 151 357 - -
Dod05g0558 565 MobiDBLite consensus disorder prediction 248 276 - -
Dod05g0558 565 ProSiteProfiles Myb-like domain profile. 202 252 IPR001005 -
Dod05g0558 565 SUPERFAMILY Homeodomain-like 152 248 IPR009057 -
Dod05g0558 565 ProSiteProfiles Myb-like domain profile. 155 201 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0558 Dod-Chr5 8120766 8126729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0558 39 492 MYB Transcription Factor Family AT5G58850 37.448 7.71e-79 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod05g0558 Myb_DNA-bind_6 7.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0558 K09422 - gmx:100786295 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0558 05 8120766 8126729 Dod05g0558 05 8120766 8126729 ECH