Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0556 ATGCCTGCAATCGCAGCTCCATCCGCACCTAACTCCCACAAGCGCAGGCTCAGATCCCACGCGCCCCCACGCGCCGACCCTCCCTCGACTCCGTCGCCGCCCAAATGGAAATCCCCGCGCCAATCCATCACCGCAACCCCCAATTCCGCCGCAACTGACAACGACGTCGCCGCCGAAGAATGCAAGCCTAAATTGCAAAAACCCGAACCTGTGAAACCTATTTGGAATCCCAAAGATGGGGAGCAAATGAGGGTGGTGAAGGAGGCATTGCACTTGTCAACTGCACCGTCTTCGATTGTGTGCCGCGAAGAGGAGCAGGATTTGGTTTTGGGGTTCTGCAAGGTCAGCATTGAGCACCAGAAGGCTGGGAGCTTGTACATTTGTGGGTGCCCCGGAACTGGGAAATCGTTGTCTATGGAGAAAGTGAAAGAGCTTTTACTCAACTGGGCTAGAGAGGAAGGTTTTCTGCTGCCAGATGTTTTATCAGTGAATTGTACATCCCTTGTCAATACATCTGATATTTTCACTAAGATTGTTGGGTTAAACCAACCACGGGGAAAAAAGGTTTCGGTGACACCCTTGCAACAACTTCAGAACATGTATTCCCAGAAGTCATCTACCAAGAAAATGATGTTGATAATAGCTGATGAATTAGATTATCTGATAACAAGAGACAGGGCTGTGCTCCATGATCTTTTCATGCTTACCACCTTTCCGTTTTCCAGATGTATATTAATAGGGGTAGCAAATGCGATTGACCTAGCTGATCGATTTCTTCCAAGGCTTACATCACTAAATTGCAAGCCTATTGTGGTGACTTTTCGGGCTTACTCTAAGGATCAGATTCTTAGGATTCTCGAAGAAAGACTAAATGAACTTCCTTACGCTGTCTTTCAACGTCAAGCACTGGAACTATGTGCGTGGAAAGTTGCTGCAGCTTCTGGAGATATGCGGAAAGCTCTCTGTATATGCAGGGGCGCAATTGAGATGCTAGAAGCTGAAATTAGAGAATCTGCCTCCAATTTGAGTACTTCATTAGAAGAGAAATCATCCTCTGAACAAAATCTTCCTACAACTCCTGATGCTATGAAAAGACAGGAGTTTGGTATTGTAAGAATTGATCACATGGCTCTTGCCTTGTCAAAGACATATAGGTCCCCAGTAGTGGATACAATACAATCTCTGCCACATCATCAACAGATTATACTCTGCTCTTCTATGAAGCATTTTCGTGGAGCCAAGAAAGATACGATCCTTGGAGAGTTGTATAAATCTTACATGGAGTTATGCAAATCATCACTAATTCCCCCAGCAGGAATCTTGGAATTTTCAAATATGTGCAGAGTGCTTAATGACCAGGGGCTTATTAGACTTGGACAATCACGAGAGGATAAACTGAGGAGAGTAACTCCAAAAGTCGATGAGGGTGATATTACTTTTGCATTGCAGGGAATCCGATTTTTTCGAAACTGTCTTCTATGA 1482 0.4501 MPAIAAPSAPNSHKRRLRSHAPPRADPPSTPSPPKWKSPRQSITATPNSAATDNDVAAEECKPKLQKPEPVKPIWNPKDGEQMRVVKEALHLSTAPSSIVCREEEQDLVLGFCKVSIEHQKAGSLYICGCPGTGKSLSMEKVKELLLNWAREEGFLLPDVLSVNCTSLVNTSDIFTKIVGLNQPRGKKVSVTPLQQLQNMYSQKSSTKKMMLIIADELDYLITRDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTSLNCKPIVVTFRAYSKDQILRILEERLNELPYAVFQRQALELCAWKVAAASGDMRKALCICRGAIEMLEAEIRESASNLSTSLEEKSSSEQNLPTTPDAMKRQEFGIVRIDHMALALSKTYRSPVVDTIQSLPHHQQIILCSSMKHFRGAKKDTILGELYKSYMELCKSSLIPPAGILEFSNMCRVLNDQGLIRLGQSREDKLRRVTPKVDEGDITFALQGIRFFRNCLL* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0556 493 SMART Cdc6_C_2 403 482 IPR015163 -
Dod05g0556 493 CDD AAA 105 263 - -
Dod05g0556 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 337 IPR027417 -
Dod05g0556 493 CDD Cdc6_C 396 478 IPR015163 -
Dod05g0556 493 SUPERFAMILY "Winged helix" DNA-binding domain 388 491 IPR036390 -
Dod05g0556 493 Pfam AAA domain 120 237 IPR003593 -
Dod05g0556 493 Gene3D - 268 391 - -
Dod05g0556 493 MobiDBLite consensus disorder prediction 1 77 - -
Dod05g0556 493 Pfam CDC6, C terminal winged helix domain 403 481 IPR015163 -
Dod05g0556 493 Gene3D - 80 267 IPR027417 -
Dod05g0556 493 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 6 490 - -
Dod05g0556 493 MobiDBLite consensus disorder prediction 36 53 - -
Dod05g0556 493 Gene3D - 392 478 IPR036388 -
Dod05g0556 493 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 6 490 - -
Dod05g0556 493 Coils Coil 328 348 - -
Dod05g0556 493 PIRSF Cdc6 4 493 IPR016314 GO:0006270|GO:0051301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0556 Dod-Chr5 8064840 8071293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0556 1 493 Core DNA Replication Machinery Family AT2G29680 56.981 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0556 K02213 - gmx:100791200 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0556 05 8064840 8071293 Dod05g0556 05 8064840 8071293 ECH