Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0551 ATGGGAAAGTGCTCCTTTCAGGATTCCCTGAAAACTCTTGAAGCCGATATTCAGTATGCCAACACCATGGCATTAAGCCATCCAAGGGATAAAGATGGAGGATGCTTTCAGATGAGACTATCATACAGTCCAGCAGCCCCCTTATTTCTGTTTCTAGTTCAGTGGGCAGATTATCGCCTTGCTGGTGCTCTTGGTTTGTTGAGAATTCTAATTTATGTGACTTATGGAGATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAACCATTAGACAATTTTACTCTGTGATATTTCCTGCTTTATTGCAACTTCAGAGAGGCATCACAGATTTGGAGGAAAGAAAACAGAAAGAACTATATTTGCATAGATACCAAAGGAGAACTGAGTTTGAAGAGAGAAGAGAATCTGAAATTGACATTGAAAGGGAAGAGGAATGTGGGGTTTGCTTGGAGGTGAAAGGAAAAGTTGTGCTGCCTAATTGCTGCCACCATATGTGTTTGAAGTGCTACAGAGACTGGTGTGTGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTAAAGAGAATGAACTCAGGGGACCTTTGGATCTACACAGACACTAGTGACATTGTTGATATTGGGACAATTTTCAAAGAGAATTGCAAGATGCTGTTTCTGTATATAGGGAAGTTGCCTCTAGTAGTTCCAGACCCCAGACATGTATCCTATGATCCATTTTTAAGGCATGCCAGTTGA 741 0.4157 MGKCSFQDSLKTLEADIQYANTMALSHPRDKDGGCFQMRLSYSPAAPLFLFLVQWADYRLAGALGLLRILIYVTYGDGKNTMSIYERKATIRQFYSVIFPALLQLQRGITDLEERKQKELYLHRYQRRTEFEERRESEIDIEREEECGVCLEVKGKVVLPNCCHHMCLKCYRDWCVRSQSCPFCRDSLKRMNSGDLWIYTDTSDIVDIGTIFKENCKMLFLYIGKLPLVVPDPRHVSYDPFLRHAS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0551 246 Pfam Ring finger domain 146 185 IPR001841 -
Dod05g0551 246 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
Dod05g0551 246 SUPERFAMILY RING/U-box 132 190 - -
Dod05g0551 246 SMART ring_2 147 184 IPR001841 -
Dod05g0551 246 PANTHER RING FINGER PROTEIN 41, 151 1 243 - -
Dod05g0551 246 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Dod05g0551 246 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 243 - -
Dod05g0551 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 194 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0551 Dod-Chr5 7997141 8001395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0551 139 188 C3H Transcription Factor Family AT5G41350 37.736 5.19e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0551 - - gmx:100808567 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0551 05 7997141 8001395 Dod05g0551 05 7997141 8001395 ECH