Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0541 ATGTGCACTGGTTCCAAGATGAAGCCTTCTCAGACTTGTTTGGCTATGGAGGATGTCAAACAAGAAGGTTTGCATCATAAAATTTCTATTTTGCTTGAGTTTTCAGCCTCAGATGATGTAATTGGTTTCAAGGATGCTGTTGAGAAAGAGGGTCATGATGTTGGTGAGGTGGGGTTGTGGTATGGAAGGAGGGTTGGTTCAAAGGAAGTTGGGTATGAAGAGAGGACCCCTCTCATGATTGCTGCTATGTTTGGAAGCAAAGGTGTATTGTCTTACATTCTTGGAACTGGCAGAGTTGATGTTAACCAGGCTTGTGGATCGGACAGTGCTACTGCCCTCCATTGTGCTGTCGTTGGGGGTTCTTCTGCTTCTCCTGAGGTTATCAAGCTTTTGCTTGATTCATCTGCAGATGTTGATGCTGTTGACGCCAATGGTAACCGGTCCCGGGACCTGATTGTCTTGGTGTCTAATAGCATCTTCAATTCAAGAAAGAGGGTGCTACATGCCATTCTAGAAGGTGCAGATTGTATTGATGAGGCTTGCCTTATATTTGAGGAAGCAGTCAGCCCAACTGAGAGACAGCGATGGCCACAAGATATGGATGCGCCTCGTGTTTCGACAGAGAAGAGAGATTATCCTATTGATCTCTCTCTTCCAGACATAAAGAACGGGATGTATGGTACAGATGAGTTTAGGATGTATGCATTCAAAGTAAAACCTTGTTCAAGGGCTTATCCTCATGATTGGACCGAGTGCCCCTTTGTTCATCCCGGGGAAAATGCGAGGCGGCGTGATCCAAGGAAGTATCATTATAGTTGTGTCCCTTGCCCGGAGTTTAGGAAGGGATCTTGCAGCAAGGGGGATTCCTGTGAATATGCACATGGCATTTTTGAGTGCTGGCTTCACCCTGCCCAGTATAGAACAAGGCTTTGCAAGGATGAGACTGCATGCACCAGGAGAGTTTGCTTCTTTGCTCACACGCCGGAGGAGCTTCGCCCCTTGTATGCTTCCACTGGTTCTGCTATGCCTTCTCCCACATCATATTCACCTGGCGCATCTTCATTGGAGATGGGTTCAGTTAGCCCCTTCACCCTTGGTTCTCCATCTACCATGATATCATCTGCCTCAACACCACCTTTGACTCCATCTGGTGGATCTTCTCCAACCATGTGGCAGACTCAGCCTAATTTTTCAGTCCCTACCCTTCAGCTGTCGAAAAGCAGATTCAAAACTGCATTAAATGCCAGAGATTTCGATCTGGATATTGAACTGCTTGGTCTCGAAAATCGCCGGCTTTCGCAGCAGCTGCTAACAGATGAGATGGCTGGTCTCTCATCCCCTTCCGAATGGCAGAGTTCCTTGCCTGATAGTCCATCTTTCCCACTCTCTTTAGGTGATCATGCTGAGGAGTTAAATAGGCTTGCAGGATTGAAGCCTACTTATCTTGATGACATTTTTGGGTCCCAATTGCAATCTCCAACTGGAATTCATCAGATGCTAGGTTATTCTTCCAATCTTTCAGCTTCAAATGTGATTGGATCACCCTCATACAGGGTTGATACATCGGTTGCTGCAGCCACAGCTGCTTTCAATTCAAGAAATGCTGCTTTTTCGAAGAGGAGCCAAAGCTTTATTGAGCGAGGCGTGTTGAGTTGTGATTTGGAGCTTCCTTCTCCTGCTAAGTCTATAGCTATGGAGTCATCTACCTTGTCTGGCTGGGGCTCCCCTGATGGCAGATTAGACTGGTCCATCCGCGGAGAAGAACTAAATAAGATGAGGAAGTCTGCTTCTTTTGGATTCCGAAACAGCAGCAGTAGTCCTTTAACAATGGCTACAACCCCAATACTGCCACATGTTATTGATGAACCAGATGTTTCTTGGGTTCATTCACTTGTGAAGGATGTTGCCACACCAATGGAATATGGTCAGTACAGTACTGAAGAGCAGCATCAAGAGCTGCAACGCCAGCTTAACGATGGAACAGACGCGATTCCAGCTTGGCTGGAGCAATTGTGCATGGAACAGGAGCAGATGGTGGCATAA 2043 0.4665 MCTGSKMKPSQTCLAMEDVKQEGLHHKISILLEFSASDDVIGFKDAVEKEGHDVGEVGLWYGRRVGSKEVGYEERTPLMIAAMFGSKGVLSYILGTGRVDVNQACGSDSATALHCAVVGGSSASPEVIKLLLDSSADVDAVDANGNRSRDLIVLVSNSIFNSRKRVLHAILEGADCIDEACLIFEEAVSPTERQRWPQDMDAPRVSTEKRDYPIDLSLPDIKNGMYGTDEFRMYAFKVKPCSRAYPHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDSCEYAHGIFECWLHPAQYRTRLCKDETACTRRVCFFAHTPEELRPLYASTGSAMPSPTSYSPGASSLEMGSVSPFTLGSPSTMISSASTPPLTPSGGSSPTMWQTQPNFSVPTLQLSKSRFKTALNARDFDLDIELLGLENRRLSQQLLTDEMAGLSSPSEWQSSLPDSPSFPLSLGDHAEELNRLAGLKPTYLDDIFGSQLQSPTGIHQMLGYSSNLSASNVIGSPSYRVDTSVAAATAAFNSRNAAFSKRSQSFIERGVLSCDLELPSPAKSIAMESSTLSGWGSPDGRLDWSIRGEELNKMRKSASFGFRNSSSSPLTMATTPILPHVIDEPDVSWVHSLVKDVATPMEYGQYSTEEQHQELQRQLNDGTDAIPAWLEQLCMEQEQMVA* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0541 680 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Dod05g0541 680 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 18 679 - -
Dod05g0541 680 ProSiteProfiles Ankyrin repeat region circular profile. 108 142 - -
Dod05g0541 680 PANTHER UNKEMPT FAMILY MEMBER 18 679 IPR045234 -
Dod05g0541 680 SUPERFAMILY Ankyrin repeat 68 152 IPR036770 -
Dod05g0541 680 SMART ANK_2a 108 140 IPR002110 GO:0005515
Dod05g0541 680 SMART ANK_2a 73 103 IPR002110 GO:0005515
Dod05g0541 680 Gene3D - 42 168 IPR036770 -
Dod05g0541 680 ProSiteProfiles Ankyrin repeat profile. 108 143 IPR002110 GO:0005515
Dod05g0541 680 Pfam Ankyrin repeats (3 copies) 66 141 IPR002110 GO:0005515
Dod05g0541 680 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Dod05g0541 680 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Dod05g0541 680 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Dod05g0541 680 Gene3D - 271 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0541 Dod-Chr5 7807858 7811002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0541 1 675 C2H2 Transcription Factor Family AT5G12850 37.584 7.63e-138 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod05g0541 Ank_2 6.7e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0541 - - aprc:113846970 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0541 05 7807858 7811002 Dod05g0541 05 7807858 7811002 ECH
Dod08g1056 08 13335064 13336833 Dod05g0541 05 7807858 7811002 ECH