Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0538 ATGACCTCTCCTCCCTCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCACAATCCCCTCCCCCCGCCGTCGCCTCCGCCATCGACTCCATCCGCCTCTCCCTCTCCTCCCTCTCTGCCGATCCTCCGCACCGCCGCCACTTCGACAACCCCCGCCGCTTCTCCGCCTTCGCCCGCCGCCTCCACCTCGTCCTCGACCAGCTCCTCGTCTCCATCCTCCGCACGGCGCAGCCTCCGCCGCCCGTCGTGACGGCACTGAAGGGGATCTCCGGCGACCTGTCCAAGGCGGCGGAAACGGTGTCGGTTTACCAGAACGCGAGCAAGATCTTCGTCCTGATGAACTGCAAGACGCTGTGCTCGTCGCTTCAGGAGCGAACTGCGGCGATTTCAGGGTGGCTGGCGTTGCTGGAATCGGGTGTTGAGGAGTTCCCTGAGCTTCGCAAGAAGGTTTCGGATCTTTGTAGGGACATGAAGCTCGCAAACTTTACGGTCACAGAGAACGAAGAGAGGGTGCAGTGCACCTTGGAGAAGGAAGGGCAAGGGAGAGAGACAAGCAAAGCAGTGCAGAGTGCTATTGTGATGGATTTGGCTCGTGCTTTTGGGGTTGAACCTGATGATCATACTGAGTTCTGTAACCAGGTGAACCTCTTCAAAAATGATGCCTTTCGCTCCAACTCTGTGCCAGAGAGAAGGATTTTGGTTTCTCTGGAGAGCATTCTGAAAAACTGGTCTGTTAAACCTGCCTTTGCAACCCACAATATGAACTTCGATGTTGAAGATGATGTTGCTGCTAATGCTTCCATTTTGCCCTTCAAAAATTTCCTTTGCCCCTTGACCAAGGAAGTGATGAGGGATCCTGTGGTGGTGCTGGAGTCTTCTCAGACCTACGAGAGGACTGCTGTTGAGTACTGGTTCGAGACGTGCATTGAGGATGGCTGTGACCCAACTTGTCCTGTCACTGGAATTGCCCTCAAGTCCCTGGAGCTGAAGCCCAATATTGGCTTGGCAGGGGCAATTGAAGAGTGGATTGGCAGGGTTGTCGAGCATCAAGCCAAATCTGCTCTGCAGCATCTCATTGAGGAACCGTTGTCCGTTGAGCGTGTTGAGCGAGCTCTGGATAATGTTTATAAGGTTTCTGAAGAGCACCCCACTCGCAGATATATAATCAGGAATGCTGGCATTGTGTTGTTGATAGTGACTGTGCTTAGTAATAGCTCTAAAACTATTGGGTCGCAGTTGAGAAGCAAAGCTCTAATGACTTTACTTAGCATGGCTAAGGATGAAGAAAGCAGGAAAATAATGCTTGAACGGGGTATCACTAGATTGGCTGTACATAGTCTTATTGGGAACTCTGAGAAAGAGAGAGAGAATGCTGTCAAGTTATTATTAGAATTCTGCAGTGATGAAGATTGTTGCATAAGAATTGCATCAGAGAAAGGTGCATTAGTTCTTCTGTCAAGTATGGCAGGAAATCTGGCGTATCCATCTTTGTCCAATTTAGCTGAGGAAGTCTTAAGGAAGATGGAGAGAGTAGAAGATAATATTCAGTGTTTGGCAGCAGCTGGAAGATTTGAACCATTACTTTCACGGCTACGTGATGGTTCTGATGGTGTTAAGATAGAGATGGCCTCTCTGGTGGGAAGGATGACCTTGACAAATAGCTGTAAAGAACAAATTGCTAGGCATAGTGCCAAAGTATTTGTTGACTTGCTGTCTAATCCAGAAGGAAGGGAACCAAGTTTGCAAGCATTATATAACTTGTCAGAATTTGATGACAATGCAGCCATCCTTGTTGAGTCTTCAGTCCTGCCATCTCTTATAGAAGTTCTTTTTGATGAGCAGGATCCTTCATGTGAGTTGAAGTCATTAGCTGCTTCAACGATTGCAAATATAGTATCAAAGCCAGGGCATTGGGAATTAGCGTCTGCTGACAAGAAGGGAAATCCAATGCAGTCAGAAAATATTGTTCTCACACTTTTGGGGCTTTTAAACCGTGTGTCGTCTCAATGTCAAGTGACTGTTCTTCGCATTCTTTGTGGAATTACATCATCTCCTCAAGCATCAGAGTTGGTAGCCATGCATATCATGTCTGGTGGTGGCTATAGAATGGTTGCACCATTTCTTCAACACTCAGAAGCTGAACACAGAAGATTTGCTTTTAAACTTACCAGACAGCTATCTGAATGGTGCAGTCAAGATCTAGCAAATGAGCTGAGGCTTTCAAACATGCTTACCATAATCAAAGATAAACTATTGGATGAGCAATCAACAAGTGATGAGAGATCAGAAGCAGCACAGATACTTGCCAGCCTTTCCCTCTCGGATGATGAAGTAAAGACACTTTTAGGCGGCAATTTTGTGGAATGGACTGTTGGTACTCTTAAGAACCAGCAGCGCATTTCCAGTGCAAGGTTTTCACAAACTGCATCAGGCATGCAGGAAGGTCTCCTAGGTCTCTTACTTCACTTCACTAGGAACCTTGATCAGCCGACTCTTAGTCTAATTGGAGAAAAGTGTCTCATGACCGTTTTCTGTGAGCAGCTGGATTATACATCGAAATCTAAGACAAAACGCCTTGCTGCTGTTGGATTGAAAAACTTATCAGAACTTGGAAGCTCATTTAATGGTTGGGAGTCCGAACCGACTCCTCGCGGTGGGTTCTGTTCTTTGGTGTTCATGTGTGGGAGAGCCTCTGGTCAACCTTCTACATGCCCCATTCACAACAGCAACTGTGAGGAATATAGTCAGTTGTGCCTGCTCAAGACCAACTGTATCAAGCCCCTGGTTGATCTCCTCAGTGACAATGACACCGAAGTTCAGCTTGCTGCCGTGGACGCGCTATCTACTCTAGTAGTAGACCCCGCGTCCCATAGTTTCAAAAGAACTGTTGATGAGCTTGAGCAACTGGGTGTGGTTGATGCTGTGATCACTCTTTTCACGGAGGCTAGATCTGGGGAGCTTCAGGAGAAGACAATTTGGATAATAGAGAAGATATTGAGAGTGGAAAATCATAGCCATAGGCATGCACTTAATCAGTCTCTAGTGAGATGCTTAGTTGAAGCCTTTAAGCATGGGAATACCAACACAAGGAAGCATGCTCAGGATGCTCTTACCCTTCTAAAGCAGTTATCAGGTATTAGTGGGAAGGCATCAAGTCAATCTCAACCTCGTAGATAG 3174 0.4742 MTSPPSPPPPPPPPPPQSPPPAVASAIDSIRLSLSSLSADPPHRRHFDNPRRFSAFARRLHLVLDQLLVSILRTAQPPPPVVTALKGISGDLSKAAETVSVYQNASKIFVLMNCKTLCSSLQERTAAISGWLALLESGVEEFPELRKKVSDLCRDMKLANFTVTENEERVQCTLEKEGQGRETSKAVQSAIVMDLARAFGVEPDDHTEFCNQVNLFKNDAFRSNSVPERRILVSLESILKNWSVKPAFATHNMNFDVEDDVAANASILPFKNFLCPLTKEVMRDPVVVLESSQTYERTAVEYWFETCIEDGCDPTCPVTGIALKSLELKPNIGLAGAIEEWIGRVVEHQAKSALQHLIEEPLSVERVERALDNVYKVSEEHPTRRYIIRNAGIVLLIVTVLSNSSKTIGSQLRSKALMTLLSMAKDEESRKIMLERGITRLAVHSLIGNSEKERENAVKLLLEFCSDEDCCIRIASEKGALVLLSSMAGNLAYPSLSNLAEEVLRKMERVEDNIQCLAAAGRFEPLLSRLRDGSDGVKIEMASLVGRMTLTNSCKEQIARHSAKVFVDLLSNPEGREPSLQALYNLSEFDDNAAILVESSVLPSLIEVLFDEQDPSCELKSLAASTIANIVSKPGHWELASADKKGNPMQSENIVLTLLGLLNRVSSQCQVTVLRILCGITSSPQASELVAMHIMSGGGYRMVAPFLQHSEAEHRRFAFKLTRQLSEWCSQDLANELRLSNMLTIIKDKLLDEQSTSDERSEAAQILASLSLSDDEVKTLLGGNFVEWTVGTLKNQQRISSARFSQTASGMQEGLLGLLLHFTRNLDQPTLSLIGEKCLMTVFCEQLDYTSKSKTKRLAAVGLKNLSELGSSFNGWESEPTPRGGFCSLVFMCGRASGQPSTCPIHNSNCEEYSQLCLLKTNCIKPLVDLLSDNDTEVQLAAVDALSTLVVDPASHSFKRTVDELEQLGVVDAVITLFTEARSGELQEKTIWIIEKILRVENHSHRHALNQSLVRCLVEAFKHGNTNTRKHAQDALTLLKQLSGISGKASSQSQPRR* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0538 1057 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 344 IPR013083 -
Dod05g0538 1057 SUPERFAMILY ARM repeat 351 788 IPR016024 -
Dod05g0538 1057 SMART Ubox_2 272 341 IPR003613 GO:0004842|GO:0016567
Dod05g0538 1057 Coils Coil 500 520 - -
Dod05g0538 1057 SUPERFAMILY RING/U-box 271 342 - -
Dod05g0538 1057 MobiDBLite consensus disorder prediction 1 23 - -
Dod05g0538 1057 SUPERFAMILY ARM repeat 706 1041 IPR016024 -
Dod05g0538 1057 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 20 1052 - -
Dod05g0538 1057 ProSiteProfiles U-box domain profile. 268 348 IPR003613 GO:0004842|GO:0016567
Dod05g0538 1057 SMART arm_5 381 425 IPR000225 GO:0005515
Dod05g0538 1057 SMART arm_5 827 868 IPR000225 GO:0005515
Dod05g0538 1057 SMART arm_5 1002 1044 IPR000225 GO:0005515
Dod05g0538 1057 SMART arm_5 509 550 IPR000225 GO:0005515
Dod05g0538 1057 SMART arm_5 551 588 IPR000225 GO:0005515
Dod05g0538 1057 SMART arm_5 910 951 IPR000225 GO:0005515
Dod05g0538 1057 SMART arm_5 589 632 IPR000225 GO:0005515
Dod05g0538 1057 SMART arm_5 426 466 IPR000225 GO:0005515
Dod05g0538 1057 Pfam Armadillo/beta-catenin-like repeat 918 949 IPR000225 GO:0005515
Dod05g0538 1057 Pfam U-box domain 272 342 IPR003613 GO:0004842|GO:0016567
Dod05g0538 1057 MobiDBLite consensus disorder prediction 1 22 - -
Dod05g0538 1057 Gene3D - 345 879 IPR011989 -
Dod05g0538 1057 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 20 1052 - -
Dod05g0538 1057 Gene3D - 896 1043 IPR011989 -
Dod05g0538 1057 CDD RING-Ubox_PUB 273 320 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0538 Dod-Chr5 7745199 7751964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0538 270 1047 U-box Gene Family AT1G76390 30.798 4.99e-84 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0538 - - ccaj:109816409 1498.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0538 05 7745199 7751964 Dod05g0538 05 7745199 7751964 ECH