Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0489 ATGGTGGGTTCATCACCTTGTGCTTCCTGCAAATTGTTGAGGCGTCGTTGCACTAAGGAGTGCATCTTTGCTCCTTACTTTCCTTCTGATGACCCCCGCAAGTTTGCCATTGTTCACAAGGTCTTTGGTGCTAGTAATATCAGCAAAATGCTGCAGGAGCTTCCAGTTCATCAAAGAGCAGATACTGTAAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTAAGAGACCCTGTATATGGATGTGTTGGAGCCATATCATACCTGCAAAGCCAGGTTTCACAATTGCAAATGCAGCTTGCAGTGGCTCAGGCAGAGATTCTCTCCATACAGATGCAGCAAGAGCCTACCTTACCAACCCAAGTAGACCAAGATGACAGATTTATGCTCCTATCTGACAACAATGACTATGAAATCCTTCCTCAATACCTCAGCTTTGCTTCATCTTCTTCCTCATCTTCCAATGTATTCCAAGACTCTCATCAGCCTCTTAAGAGAGAGCCTTTTTGTTAA 510 0.4392 MVGSSPCASCKLLRRRCTKECIFAPYFPSDDPRKFAIVHKVFGASNISKMLQELPVHQRADTVSSLVYEANARVRDPVYGCVGAISYLQSQVSQLQMQLAVAQAEILSIQMQQEPTLPTQVDQDDRFMLLSDNNDYEILPQYLSFASSSSSSSNVFQDSHQPLKREPFC* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0489 169 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Dod05g0489 169 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 3 167 - -
Dod05g0489 169 Coils Coil 85 105 - -
Dod05g0489 169 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Dod05g0489 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0489 Dod-Chr5 6737591 6738602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0489 3 130 AS2 family AT2G30130 81.955 1.72e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod05g0489 LOB 2.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0489 - - gmx:100780073 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0489 05 6737591 6738602 Dod05g0489 05 6737591 6738602 ECH