Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0429 ATGTTTCTAGGTTTTATGGAGATATCATTGTTAAAGATGCTTGTTAATGGCATATCCTCATTTTTACATTTATCCTTTTCTGGAAACAATAAATCAGAACCTGTCTCAAAGTATTACCAAAAGGCAGCAGAGATACTTAACTTGTTGAAGCCAGTCTTTGATGCGATTGTTAATTCTGAGTTAGCTTCTGATGAAGTGCTTAGTAAGATATTTGAAGAACTTGGTCTTGCTGTTGATGAACTACGGGAGCATATTGACAGCTGGCACCTATTGTCCAGTAAAGTTTACTTTGCTATGCAAGTTGAACCCTTAATATCTAGGATTCGGACTTCCGGGCTCAATATTTTCCAGCAGCTGAAGGTTTCTCAGCAATGTCTCCCTGATGAATTGAGTTCTGAACATGTAGAGCCCTGTGTTCAGAAACTTAAACATTTGGGACATGAAGAAGCAACATTAGTCATTAAGGAAGCTATTACGGAACAAATGGAAGGTGTAGGACCCAGTTCAGAGGTCTTGGCAAAAATTGCTGATAGTCTAGGCCTGAACTCTAATCAGGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAAGTTGAAGGAGAATGCTGAACAAACTGAAAAGACTGCAGAAGCTGAATACATTGATCAAATGATTGCTGTTGTAACGCGAATGCATGAGCGTCTTGTTATGCTTAAGCAAGCCCAGAGTAGCAGCCCAGTTCCAGTACCTGCTGATTTTTGCTGTCCCCTCTCTTTGGAGTTGATGACTGATCCAGTGATCGTGGCATCAGGGCAGACTTACGAGCGGGCTTACATCAAGAACTGGATTGATCTTGGACTTACTGTTTGTCCAAAGACACGTCAAACTCTAAGTCACACCAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAATTGGTGCGAATCAAACAATGTGAAACTGGTTGATCACACTAAGTCTACGAATTTAAATCAGGCATCTGTCCTCCAGGGGTATATGGAGTCTGGTACAACCAAGGAGTCACCTGTTTTTGCTCATTCCAGAAGCAACCAGCCATCCTCACCTGAGTCGGCTCGTTCTCATTCTTTCAGTTCACCAGGTAATAACTTAACTTCTGGTGGAATCCAACGAGAGGGAACATCACCATTGCATCCCCGTTCAACATCAGAAGGTTCCTTAAGTGGCATGGTTAATGGGCAATACATGGATCTTGCCAGAATATCACCCACAGGTTTAGACGACAGGTCTGCCAGCTCAGATGAAGGCAGTGTGGGTTCAGTTGGCCAACCATCAGTGTCACCATCTAGAAGGGAATCCTCTGGTGCCTCTATCTCTGACCAAGCTCAAGCCCATGTAAGAACTGTTTCTGATTCCAGTGCACTTTCTAGTGCAAGTTTTCCTCAAGAAACACCGGGTGATGATAATAGTGCTCCTCAGCTGTCAGCCAGTCCAGCCTACAGTAGAGAGGCTTCGGGTGAACTACATGTGAGTCCAGATGCTGCAGGTGCTGCTGCCATGCCATCTTCGCATAGAGAACCTGAGTTCCCACCCCGATTGGTGGAGACAAGGTCTCGAAGCCAAGGTTTATGGCGGCGGCCATCAGAGCGGCTTATTCCTAGGATGGTATCTTCTCCTGCTACTGAAACCAGAGCTGATCTTTCTGGCATTGAATCCCAGGTCCGGGATTTGGTTGAGGGCTTGAAGAGCTCTGATCTTGATACTCAGAGAGATGCAACAGTAGAACTTCGCCTTCTTGCTAAGCACAATATGGATAATCGAATTGCAATTTCAAACTGTGGAGCCATTAGCCTCTTAGTTGACTTACTTCGATCAATCGATACAAGGATCCAGGAAAATGCTGTTACAGCACTTCTCAACTTATCAATCAATGATAACAACAAAAGTGCAATTGCAAATGCTGGTGCAATTGAGCCTCTAATTCATGTGCTCGAGACAGGTAGCCCAGAAGCCAAGGAGAATTCTGCTGCTACTCTTTTCAGCTTATCGGTGGTTGAGGAAAACAAGATCAGCATTGGGAGGTCTGGGGCTATTAGGCCACTGGTTGATCTATTAGGGAATGGAACCCCTAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGAACCGAATTGTGCAAGCTGGTGCTGTGAAGCACCTTGTGGAGTTAATGGATCCGGCTGCTGGAATGGTTGATAAAGCAGTGGCTGTCTTAGCAAATCTTGCTACAATTCAAGAAGGAAGAAACGCAATTGGTTCGGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTCGAGTTGGGTTCTGCAAGAGGAAAAGAGAATGCTGCGGCAGCTCTTCTGCATCTTTGCTCTCATAGTAACAGATTTTTAAGCATGGTGCTTCAGGAAGGAGCTGTCCCACCATTGGTAGCCTTATCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCCCAGGCTCTCCTCAATCTATTTAGGAGTCAAAGACACAGTAACGGCGGGAGGGGCTGA 2535 0.4493 MFLGFMEISLLKMLVNGISSFLHLSFSGNNKSEPVSKYYQKAAEILNLLKPVFDAIVNSELASDEVLSKIFEELGLAVDELREHIDSWHLLSSKVYFAMQVEPLISRIRTSGLNIFQQLKVSQQCLPDELSSEHVEPCVQKLKHLGHEEATLVIKEAITEQMEGVGPSSEVLAKIADSLGLNSNQEVLIEAVALEKLKENAEQTEKTAEAEYIDQMIAVVTRMHERLVMLKQAQSSSPVPVPADFCCPLSLELMTDPVIVASGQTYERAYIKNWIDLGLTVCPKTRQTLSHTNLIPNYTVKALIANWCESNNVKLVDHTKSTNLNQASVLQGYMESGTTKESPVFAHSRSNQPSSPESARSHSFSSPGNNLTSGGIQREGTSPLHPRSTSEGSLSGMVNGQYMDLARISPTGLDDRSASSDEGSVGSVGQPSVSPSRRESSGASISDQAQAHVRTVSDSSALSSASFPQETPGDDNSAPQLSASPAYSREASGELHVSPDAAGAAAMPSSHREPEFPPRLVETRSRSQGLWRRPSERLIPRMVSSPATETRADLSGIESQVRDLVEGLKSSDLDTQRDATVELRLLAKHNMDNRIAISNCGAISLLVDLLRSIDTRIQENAVTALLNLSINDNNKSAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVVEENKISIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIQEGRNAIGSEGGIPVLVEVVELGSARGKENAAAALLHLCSHSNRFLSMVLQEGAVPPLVALSQSGTPRAKEKAQALLNLFRSQRHSNGGRG* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0429 844 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 840 - -
Dod05g0429 844 Pfam U-box domain 241 311 IPR003613 GO:0004842|GO:0016567
Dod05g0429 844 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 683 725 IPR000225 GO:0005515
Dod05g0429 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 324 IPR013083 -
Dod05g0429 844 PANTHER U BOX DOMAIN-CONTAINING 12 840 - -
Dod05g0429 844 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Dod05g0429 844 SUPERFAMILY ARM repeat 561 833 IPR016024 -
Dod05g0429 844 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 642 684 IPR000225 GO:0005515
Dod05g0429 844 SMART arm_5 795 834 IPR000225 GO:0005515
Dod05g0429 844 SMART arm_5 713 752 IPR000225 GO:0005515
Dod05g0429 844 SMART arm_5 672 712 IPR000225 GO:0005515
Dod05g0429 844 SMART arm_5 753 793 IPR000225 GO:0005515
Dod05g0429 844 SMART arm_5 631 671 IPR000225 GO:0005515
Dod05g0429 844 SMART arm_5 590 630 IPR000225 GO:0005515
Dod05g0429 844 Gene3D - 540 841 IPR011989 -
Dod05g0429 844 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 601 643 IPR000225 GO:0005515
Dod05g0429 844 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Dod05g0429 844 Coils Coil 184 214 - -
Dod05g0429 844 MobiDBLite consensus disorder prediction 342 397 - -
Dod05g0429 844 MobiDBLite consensus disorder prediction 410 528 - -
Dod05g0429 844 Pfam Armadillo/beta-catenin-like repeat 592 629 IPR000225 GO:0005515
Dod05g0429 844 Pfam Armadillo/beta-catenin-like repeat 631 670 IPR000225 GO:0005515
Dod05g0429 844 Pfam Armadillo/beta-catenin-like repeat 674 711 IPR000225 GO:0005515
Dod05g0429 844 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 724 765 IPR000225 GO:0005515
Dod05g0429 844 MobiDBLite consensus disorder prediction 413 487 - -
Dod05g0429 844 SUPERFAMILY RING/U-box 231 317 - -
Dod05g0429 844 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0429 Dod-Chr5 5988245 5996047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0429 201 844 U-box Gene Family AT2G23140 63.467 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0429 - - gmx:100811250 1360.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0429 05 5988245 5996047 Dod08g0945 08 11673978 11678915 PCT