Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0420 ATGGCACAAAAGGCGCTTTCCATTTCTCTAATGATGATTCCTCTCGTTGTTCTCTTTATTGACATGATGCTGCAAGGTGCCAAAGCTGACTATGGCGGTTGGCAGAGTGCCCATGCCACTTTCTATGGCGGGGGTGATGCCTCAGGCACAATGGGAGGTGCATGTGGGTATGGCAATCTGTACAGCCAAGGTTATGGAACCAACACTGCAGCTCTAAGCACTGCTTTGTTCAACAATGGCCTAAGCTGTGGATCTTGCTATGAAATGAGATGTGATGATGACCCAAGATGGTGCAAGCCAGGCTCTATTATTATTACTGCTACAAACTTTTGTCCACCAAATCCAGGTTTGGCTAACAACAATGGTGGTTGGTGCAACCCTCCTCTTCAACACTTTGACATGGCTGAACCAGCCTTCTTGCAAATTGCACAATATAGGGCTGGAATTGTGCCTGTGGCCTTTAGAAGAGTGCCATGTGTCAAGAAGGGAGGGATAAGGTTCACAATCAATGGCCACTCTTACTTCAACCTTGTTTTGGTCACAAATGTTGCTGGTGCTGGTGATGTCCATGCAGTGTCCATCAAAGGGTCCAGAACTGGTTGGCAACCCATGTCAAGGAACTGGGGGCAAAACTGGCAAAGCAACTCTTATCTCAATGGACAAAGTCTCTCATTCCAAGTCACTACTAGTGATGGTAGAACTGTGACAGGCTTTAATGTGGCACCGGCCAATTGGCAATTTGGTCAGACCTTCCAAGGGGGTCAATTTTAG 771 0.4708 MAQKALSISLMMIPLVVLFIDMMLQGAKADYGGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDDDPRWCKPGSIIITATNFCPPNPGLANNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVTGFNVAPANWQFGQTFQGGQF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0420 256 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Dod05g0420 256 Gene3D - 20 159 IPR036908 -
Dod05g0420 256 Pfam Lytic transglycolase 69 153 IPR009009 -
Dod05g0420 256 Gene3D - 164 256 IPR036749 -
Dod05g0420 256 PANTHER EXPANSIN 7 256 - -
Dod05g0420 256 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Dod05g0420 256 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Dod05g0420 256 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Dod05g0420 256 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Dod05g0420 256 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Dod05g0420 256 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Dod05g0420 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Dod05g0420 256 PANTHER EXPANSIN-A15 7 256 IPR002963 GO:0009664
Dod05g0420 256 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Dod05g0420 256 SUPERFAMILY Barwin-like endoglucanases 33 182 IPR036908 -
Dod05g0420 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 164 IPR007112 -
Dod05g0420 256 SMART dpbb_1 69 154 IPR007112 -
Dod05g0420 256 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Dod05g0420 256 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Dod05g0420 256 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Dod05g0420 256 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Dod05g0420 256 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Dod05g0420 256 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Dod05g0420 256 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Dod05g0420 256 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Dod05g0420 256 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0420 Dod-Chr5 5876288 5879442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0420 9 256 Expansin Gene Family AT2G40610 78.715 9.12e-151 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0420 - - gmx:100499976 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0420 05 5876288 5879442 Dod05g0420 05 5876288 5879442 ECH
Dod05g0420 05 5876288 5879442 Dod09g1715 09 38877225 38878849 ECH
Dod08g0935 08 11459974 11462349 Dod05g0420 05 5876288 5879442 ECH
Dod05g0420 05 5876288 5879442 Dod08g0935 08 11459974 11462349 PCT