Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0417 ATGGCAAGAAAGAAGGTGAAACTTGCATTCATTGTCAATGCTGATGCAAGGAAAGCATCCTACAAGAAAAGGATGAAGGGCATATTGAAAAAGATTGAAGAACTCAGCACCCTTTGCGGGATCGAAGCATGTGAGACCTTGGACAACTTGACTATGGTTGATCTAAATGATCTGGCATGCTGGATGGTGAGAAACAGAAGGAAATCTACCATATGTTGGATGCACTCAACAAGAACTTGGCTTCAACAAGTCAAAACCCAACCAGAGCATGAAGTTGAGGTGGAACTGGGAGCTGCACAAATAGTGGCATATGGAGCAACCAATCAAGGAGAGGATCGTGGAAAAAGGGTTCTTGATGACAACATGGATGCCACACAAGATGTGGCATGGTACTTAGACCAGCTGATCAATGGTGAAGAGGATGAGAATCAACTGCTACCATTTGGAGATTTCAATTGCCTGCCCAAGTGA 471 0.4395 MARKKVKLAFIVNADARKASYKKRMKGILKKIEELSTLCGIEACETLDNLTMVDLNDLACWMVRNRRKSTICWMHSTRTWLQQVKTQPEHEVEVELGAAQIVAYGATNQGEDRGKRVLDDNMDATQDVAWYLDQLINGEEDENQLLPFGDFNCLPK* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0417 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod05g0417 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod05g0417 156 SUPERFAMILY SRF-like 1 44 IPR036879 GO:0003677|GO:0046983
Dod05g0417 156 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 2 48 - -
Dod05g0417 156 ProSiteProfiles MADS-box domain profile. 1 42 IPR002100 GO:0003677|GO:0046983
Dod05g0417 156 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Dod05g0417 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 44 IPR002100 GO:0003677|GO:0046983
Dod05g0417 156 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Dod05g0417 156 PANTHER MADS BOX PROTEIN 2 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0417 Dod-Chr5 5822564 5823264 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0417 1 47 Type I MADS-box Gene Family AT3G05860 57.447 2.49e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod05g0417 SRF-TF 6.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0417 - - ccaj:109816875 75.485