Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0416 ATGGCAAGAACAAAGGTGAAACTTACATTCATTGTCAATGCTGCTGCAAGGAAAGCATCCTACAAAAAAAGGAAGAAGGGCATATTGAAGAAGATTGAAGAGCTCGGCATCCTTTGTGGGGTCGAAGCATGTGCTATAATCTATAGTGAATTTGAACCACAACCAGAGGTTTGGCCATCCCCAGAGGATGTCCAAAGGATGCTCTCAAAGTTTAGGGAATATCCTTTAGTAGAGCAATGCAAGAAAATGTTTAACCAAGAGACTTACATGAAGCAAAGGATTAAGAAGGCCGAAGAGCAGTTGGAGAAAGTGAGGAAGGAGAATAGGGAGAAGGAGATGTCCTTACTCATGTACCAATATCTTATTGAAGGTAAGATTTTGGACAATCTGAATATGGTTGATCTGAATGATCTTGCATGGATGATTAATGAGAAGCAGAGTAAAATCAACCATATGTTGAGTGAACTAAACAAGAACTTGGGTTCAGCAAGTCAAATCCAACCAAAGCAAGAAGATGAGGTGGAACAAGTGGCTGCACAAATAGTAGCAGATGGACCAACCAATCAAGGAAAGGATCATGGCAAAAGGGTTATTGACAACCACATGGATGCCACACAAGATGTGGCATAG 630 0.4095 MARTKVKLTFIVNAAARKASYKKRKKGILKKIEELGILCGVEACAIIYSEFEPQPEVWPSPEDVQRMLSKFREYPLVEQCKKMFNQETYMKQRIKKAEEQLEKVRKENREKEMSLLMYQYLIEGKILDNLNMVDLNDLAWMINEKQSKINHMLSELNKNLGSASQIQPKQEDEVEQVAAQIVADGPTNQGKDHGKRVIDNHMDATQDVA* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0416 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 178 - -
Dod05g0416 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod05g0416 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Dod05g0416 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod05g0416 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod05g0416 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod05g0416 209 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 178 - -
Dod05g0416 209 Gene3D - 14 116 IPR036879 GO:0003677|GO:0046983
Dod05g0416 209 Coils Coil 87 114 - -
Dod05g0416 209 MobiDBLite consensus disorder prediction 182 209 - -
Dod05g0416 209 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Dod05g0416 209 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0416 Dod-Chr5 5816212 5816841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0416 1 162 Type I MADS-box Gene Family AT5G48670 50.617 9.96e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod05g0416 SRF-TF 5.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0416 - - gmx:100816084 208.379