Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0415 ATGGCTAGAAAGAAGGTGGACCTCAAATACATAGTGAATGATGCAAAGAGGAGGGCTTCATTGAAGAAAAGGAAAATTGGCTTGATCAAGAAGGTTGATGAAATCAGCACCCTTTGTGGGGTTGATGCTTGTGCTATTATCTACACCCCCAATGAACCTGAGCCTGAGGTTTGGCCATCCCCTTGGGAAACCAGAAAGGTGATCTCCAGATTCATGCAAATGCCTGAATTGGATCAAAACAAGAAGATGCAAAATCAAGAGAGCTTCTTGAGGCAAAGGGTCCAAAAGGTCGAAGAGCAAGTTGAAGAAACTAAGGAATGA 321 0.433 MARKKVDLKYIVNDAKRRASLKKRKIGLIKKVDEISTLCGVDACAIIYTPNEPEPEVWPSPWETRKVISRFMQMPELDQNKKMQNQESFLRQRVQKVEEQVEETKE* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0415 106 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod05g0415 106 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod05g0415 106 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 104 - -
Dod05g0415 106 Coils Coil 80 106 - -
Dod05g0415 106 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod05g0415 106 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Dod05g0415 106 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 104 - -
Dod05g0415 106 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Dod05g0415 106 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dod05g0415 106 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Dod05g0415 106 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0415 Dod-Chr5 5803980 5804300 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0415 1 99 Type I MADS-box Gene Family AT3G05860 48.485 1.43e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod05g0415 SRF-TF 3.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0415 - - aip:107644294 137.887