Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0414 ATGGCTAGAAAGAAGTTGGAACTCACATACATAGTGAATGATTCAAAGAGGAGGGCATCATTGAAGAAAAGGAAAAGTGGTTTGATCAAGAAGGTTGATGAGATCAGCACCCTTTGTGGGGTTGATGCTTGTGCTATTATCTACACGCCCAATGAACCTGAGCCTGAGGTTTGGCCATCCCCTTGGGGAGCTAGAAGGGTGATCTCCAACTTCCAAGGAATGCCTGTATTGGAGAAAAACAAGAAGATGCAAAATCAAGAGAGCTTCTTGAGGCAAAGGGTCCAGAAGACCGAAGAGCAGCTGAAGAAACTGAGGAATGAAAACAGGAGGAAAGAGATGAACCATCTCATGTACCAGTGCCTGGGCTTTGGTCAAGTCCTTAACTGTGCCAATGTGGTTTATCTCAATGATCTTGCATTGGTGGTTGATCAAAAACTCAAGTCCATCGATACAAGGATTCATAAGTTGGAAAAAGGCCAAAAGGGGGCTGCAAATAGAGGAGGAGGAGAAGCCATCAATGGAGAGCAGCCTTATCTTGCCAACAGTGACATCATTCATGGTGGTGGTGAGGGTCATCATGATGATGATGATGAGGTGAAACCATTTGGGGATGTTTCTAATCTCTAA 627 0.445 MARKKLELTYIVNDSKRRASLKKRKSGLIKKVDEISTLCGVDACAIIYTPNEPEPEVWPSPWGARRVISNFQGMPVLEKNKKMQNQESFLRQRVQKTEEQLKKLRNENRRKEMNHLMYQCLGFGQVLNCANVVYLNDLALVVDQKLKSIDTRIHKLEKGQKGAANRGGGEAINGEQPYLANSDIIHGGGEGHHDDDDEVKPFGDVSNL* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0414 208 MobiDBLite consensus disorder prediction 180 208 - -
Dod05g0414 208 MobiDBLite consensus disorder prediction 187 202 - -
Dod05g0414 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod05g0414 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod05g0414 208 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Dod05g0414 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod05g0414 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 161 - -
Dod05g0414 208 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 161 - -
Dod05g0414 208 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dod05g0414 208 Coils Coil 80 114 - -
Dod05g0414 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Dod05g0414 208 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Dod05g0414 208 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0414 Dod-Chr5 5786842 5787468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0414 1 156 Type I MADS-box Gene Family AT5G48670 50.000 9.23e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod05g0414 SRF-TF 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0414 - - aip:107644294 220.32