Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0413 ATGACTAGAAAGAAGGTGAAGCTTGCATTCATAGTCAATGACTCTGCTAGGAAGGCAACATACAAGAAGAGAAAGAAGGGTCTTCTGAAGAAGGTGGATGAACTAAGCACCCTTTGTGGCATTGAAGCATGTGCTATAGTTTATAGCCCCTATGATCCTCAACCTGAGGTTTGGCCATCCCCATGGGGTGTCCAAAGGGTGCTTGCAAAGTTCAGGAACATGCCTGAACTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGACTTTCCTGAAACAAAGGATCCTCAAGGCTAAGGAGCAGGTGAAGAAGACAAGGAAGGACAATAGGGAGAAAGAGATGACACAGCTCATGTTTCAGTACCTTAGTGCTGGGAAGATCCTTCACAACAACATGACCATGGTTGATTTGAATGATCTTGCTTGGTTGATTGACCAGAACTTGAAGGACATTGGTAGAAGGTTGGAAACACTGAACAAGAAGGCTCACTTGACTCAAAGTCAAAGCCAAGGCCAAACAACAACACCAACACCACCACCACCACCACCACTTCCACTAGGACTCACAGTGGCTAAGAATGAGGAACTTACTCTGATGGATCATGGCAATAATGGGTTGGGGATGAATAATGTTGCTGCTGCTGCTGCTGCTGACAACATGCCAAAGCAGTGGTTCATGGATTTGATCAATGGCAATGGGGATGAGACTATGCCATTTGGTGATGCCAATCTCCAAAATGGCTTTTGGCCAAACCCATTACTTCCTTGA 765 0.4549 MTRKKVKLAFIVNDSARKATYKKRKKGLLKKVDELSTLCGIEACAIVYSPYDPQPEVWPSPWGVQRVLAKFRNMPELEQSKKMVNQETFLKQRILKAKEQVKKTRKDNREKEMTQLMFQYLSAGKILHNNMTMVDLNDLAWLIDQNLKDIGRRLETLNKKAHLTQSQSQGQTTTPTPPPPPPLPLGLTVAKNEELTLMDHGNNGLGMNNVAAAAAADNMPKQWFMDLINGNGDETMPFGDANLQNGFWPNPLLP* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0413 254 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Dod05g0413 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod05g0413 254 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Dod05g0413 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Dod05g0413 254 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 174 - -
Dod05g0413 254 MobiDBLite consensus disorder prediction 161 184 - -
Dod05g0413 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 174 - -
Dod05g0413 254 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Dod05g0413 254 Coils Coil 94 114 - -
Dod05g0413 254 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dod05g0413 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod05g0413 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod05g0413 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0413 Dod-Chr5 5761467 5762231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0413 1 183 Type I MADS-box Gene Family AT5G48670 59.239 9.74e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod05g0413 SRF-TF 3.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0413 - - gmx:100813231 293.893