Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0410 ATGGAGTTGCGAACATTGGTCAAAGATCCTCTTCCTGATGCATTGAATATATCTGAAGTTGTAAGATCTGAATTAGCATCGAAAAATTCAAATCATGAGCCACCTATTGAAAACCAGAATGGACAAGTAGATGTGCCAAATTCAAATACTTGCAGGAGTATTGTACTTTATCAACCTAAAGATGCTAATCTTTGGAATTCGTCTTCTGTTCATGGTAGTAATATTCGTCTTGATAAGAAGTCTTCTGCTCCTCGTAGTAAGGTTCAAGTTCAACGTCCCAACATAATGACGCGAAATAGTAGTGCTCGTAGTTATGAGTGGGATGACTCAATAGATAACATGCCCCAAGGAATGCCGCCAAGAAGGAAGAAAAGGAAATGGACTCCATTGGAAGAGGAGACACTAAGAACTGGTGTAAAAATGTTTGGCGAAGGGAACTGGGCAACAATTCGAAGTTTTTACAGTAACATATTTGAAAATAGAAGAGGAGTTGATTTGAAGGACAAGTGGAGAAACATGATACGGTAG 528 0.3883 MELRTLVKDPLPDALNISEVVRSELASKNSNHEPPIENQNGQVDVPNSNTCRSIVLYQPKDANLWNSSSVHGSNIRLDKKSSAPRSKVQVQRPNIMTRNSSARSYEWDDSIDNMPQGMPPRRKKRKWTPLEEETLRTGVKMFGEGNWATIRSFYSNIFENRRGVDLKDKWRNMIR* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0410 175 PANTHER MYB TRANSCRIPTION FACTOR 2 175 - -
Dod05g0410 175 Pfam Myb-like DNA-binding domain 124 173 IPR001005 -
Dod05g0410 175 ProSiteProfiles Myb-like domain profile. 119 174 IPR001005 -
Dod05g0410 175 SMART sant 123 175 IPR001005 -
Dod05g0410 175 MobiDBLite consensus disorder prediction 99 128 - -
Dod05g0410 175 CDD SANT_TRF 125 175 - -
Dod05g0410 175 Gene3D - 118 175 - -
Dod05g0410 175 SUPERFAMILY Homeodomain-like 120 174 IPR009057 -
Dod05g0410 175 MobiDBLite consensus disorder prediction 25 47 - -
Dod05g0410 175 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 175 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0410 Dod-Chr5 5735234 5736334 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0410 124 173 Single Myb Histone (SMH) Gene Family AT3G49850 55.769 4.59e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod05g0410 Myb_DNA-binding 8.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0410 - K11111 vun:114187915 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0410 05 5735234 5736334 Dod05g0410 05 5735234 5736334 ECH