Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0404 ATGGAGGTAGTGGTGGCGTCGTCCTCCGTTGACGGCGGGATAGGGTGCTGGGACCTTCGCACAGGGGCGGAGCAGCTCCGCTACAAGTCTTGCTCCTCCCCTCCCCGCGGCCTCGTCTCCGTCGCCGGCCGCTTCCTCGCTTCTTCTCAGCTTCGCGAACCTTCTGCCTCCTCTGGCTCCGTTCTCTTCTGGTCCTGGTCCAAGCCTCAAGTTGAAGTTAGGAGCTTTCCAGCTGAAGTTATTATGCCCCTTGCTGCTAATCACTCAGGAACCTATATTGCTGGTGGGGGTGTGTCAGGTGAAATCTACATTTGGGAGGTTGAAACTGGCAGATTGCTTAAGAAGTGGCATGCTCATTATAGGGCTGTTACATGCCTTATATTTTCTGAAGACGACTCGCTCTTAATATCTGGTTCTGAAGATGGATCCGTGAGAGTTTGGTCCCTCTTCATGATATTTGATGATGTGAGAAGTCAGGAAGCAAATCATCTTTTTGAGCATAGCTTTTCAGAGCATGCCCTGCGCGTGACTGATGTTGTAATTGGTTACGGAGGGAGCAATGCAATTATTGTGTCAGCTTCAGAGGATCGGACCTGTAAGGTATGGAGCTTATCTACGGGAATACTACTAAGAAATATAGTATTCCCTGCTATAATTGATGCCATTGTATTGGATCCTGCTGAACACGTCTTTTATGCTGGCAGTAGAGATGGAAAAATATTTGTTGCCGCACTTCACACTGAAAGCATTGCAACTAGTAGTTTTGGGATGCATATAATTGGTTCATTTTCTAACCACAGCAAGGCAGTTACTTGCTTGGCATATAGCATTAGCGAGAATTTGTTAATATCTGGGTCAGAGGATGGAATGATTCGTGTTTGGAATGCAAGAACTCATAACATTGTCCGCATGTTTAAACATGCTAAAGGACCTGTAAATAATATTCTGGTTGTTAGACCAGAAATGGGTGCATCTTCCAATTTACAAGCATGCTCAAGAAAGAAGGGGTCGTGCTTATCCCCTCCACTGGAAAAATGTGCAAACTCAGCTGATGAAGACGTAGATGTTAAGACTGTTATCAGCCTTGGCAGTGGCAGGAGATGTGGCGATGTCTCGTATCTCAGTTCTCATGTGATATCTAATCACATCAAGGAGCTTCAGCATCAAGGCTCTGCTGCTGCTTCTGAAATGGAGATAGAGAGACTAAAACATGATTGCCAGAGGTCAATGCAAATGGTTAATCAATGGAAGACAATGTATGAAAACTTGCATCAGTTTTGTGTGAAGGAGATCTTAGATGATGATCAAGGTAAGAACCTTTGA 1323 0.4528 MEVVVASSSVDGGIGCWDLRTGAEQLRYKSCSSPPRGLVSVAGRFLASSQLREPSASSGSVLFWSWSKPQVEVRSFPAEVIMPLAANHSGTYIAGGGVSGEIYIWEVETGRLLKKWHAHYRAVTCLIFSEDDSLLISGSEDGSVRVWSLFMIFDDVRSQEANHLFEHSFSEHALRVTDVVIGYGGSNAIIVSASEDRTCKVWSLSTGILLRNIVFPAIIDAIVLDPAEHVFYAGSRDGKIFVAALHTESIATSSFGMHIIGSFSNHSKAVTCLAYSISENLLISGSEDGMIRVWNARTHNIVRMFKHAKGPVNNILVVRPEMGASSNLQACSRKKGSCLSPPLEKCANSADEDVDVKTVISLGSGRRCGDVSYLSSHVISNHIKELQHQGSAAASEMEIERLKHDCQRSMQMVNQWKTMYENLHQFCVKEILDDDQGKNL* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0404 440 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Dod05g0404 440 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Dod05g0404 440 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Dod05g0404 440 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Dod05g0404 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Dod05g0404 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 212 IPR001680 GO:0005515
Dod05g0404 440 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 5 312 IPR011047 -
Dod05g0404 440 PANTHER WD-REPEAT PROTEIN 18 1 431 IPR045227 -
Dod05g0404 440 Pfam WD domain, G-beta repeat 111 148 IPR001680 GO:0005515
Dod05g0404 440 Pfam WD domain, G-beta repeat 167 203 IPR001680 GO:0005515
Dod05g0404 440 Pfam WD domain, G-beta repeat 260 295 IPR001680 GO:0005515
Dod05g0404 440 Gene3D - 1 215 IPR015943 GO:0005515
Dod05g0404 440 Gene3D - 216 326 IPR015943 GO:0005515
Dod05g0404 440 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Dod05g0404 440 SMART WD40_4 206 244 IPR001680 GO:0005515
Dod05g0404 440 SMART WD40_4 109 148 IPR001680 GO:0005515
Dod05g0404 440 SMART WD40_4 162 203 IPR001680 GO:0005515
Dod05g0404 440 SMART WD40_4 256 295 IPR001680 GO:0005515
Dod05g0404 440 SMART WD40_4 69 106 IPR001680 GO:0005515
Dod05g0404 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Dod05g0404 440 PANTHER WD REPEAT-CONTAINING PROTEIN 18 1 431 - -
Dod05g0404 440 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0404 Dod-Chr5 5621378 5627645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0404 88 305 U-box Gene Family AT1G04510 25.000 2.76e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0404 K14829 - gmx:100791195 694.115