Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0403 ATGGGTTCCGACATTTGCGTGAATGGTTCGTGCTGCTTTCATGAGTGGAAGAAGGGTTGGCCTCTGCGATCTGGTGGATTCGCTCAACTATGCACCAAGTGCGGATTTATGGAGGAATGGAAGCATGACGTAATTGATCCATTATCTTCCAATGAGTATTCAGTTTTCTGTAACAAATTCCACTGTCAAGACACTGGTTGGAGGGAGTGTAACTTTTGCAGCAAGCCTATCCACTGCGGATGCATAGTATCTGCATCTTTGTTCGAGTATCTTGACTTTGGTGGTATAGGTTGTGCTAGCTGTGTAAATGCTTCCCAACTTCGTTTGATGAGGAATCCTGAAAATCCTAATGGGTCTGTTTCATCTACCAAAAATAATGCAAGCGATCAACATTCTGCTCCTATTTATGGCAGACAGATTGTGGGTAGTGTTGATGAAGGAAAACTTATGGAATTCTGCAGAATTGTTGAAGCTAGTGAATCCAGCTGTTGGAATCATGCTCAGAGAGATGGCACAGTTTCATGTGACGGGCAAAACAGCAAAGAAGTGACGCTCAGGGAAGTGGATACCGGATTTTCGAATGTGATGAAACCATCTGTTCAGTCATTGACATTTGCTACGTTAGAAAATAATAGATCAGCATGGGAGATTAAAAACAGACATGAATCAACTGCACAACCATCTTTAAATATGTATCTGGGAAACCCATCAGGGAACAACTCTGTGCTGCCCTCTGCTGGAGAGATTATAGAAGGAAGACTTGACGGCAAAGCATCTCCTTTTCAACAAAGATCTCGACCTATATTATTGCCCAAACCAATGAAGACTGGGCGCACCATGAATCTGGAAACAGATAAAGGCACTACTTCTCAGGCACGCATTGCCCGGCCACCTGCGGAGGGGAGGGGCAAGAACCAGTTGCTTCCTCGATACTGGCCCAGGATTACTGACCAGGAGCTGGAGCGGTTGTCTGGAGATTTGAAGTCCACTGTAGTGCCATTATTTGAGAAGGTTTTGAGTGCCAGTGATGCTGGTCGAATTGGTCGACTTGTTCTCCCAAAAGCCTGTGCCGAGGCTTATTTCCCTCATATTTCACAATCAGAAGGTCTTCCTTTGCAGATCCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATAACAATAGTAGGATGTATGTATTGGAGGGTGTGACGCCTTGCATACAGTCCATGCAATTACGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGGGGCAAACTTGTTATGGGTTTCAGAAAGGCAACAAATTCTGCAGATACACAGGATGCCTCTACATCTGGACAGTCTAATGGTGTTTCAACAACGGGAACGGCCTTTTCTGGTGGAACTGAGAATCTGCCATCTGGAAGTAATTATGCTGAAGCTGATCTTCTCCAGTCAATGAAGGGGAATGGGGAACCTAACTTAAATGGACATGCAGACCATATGCATTTGGGTACTGGAGCTGCTGGTATGCTTAAAACTGAAAATTGTGAGATGACGAACAATCATTCCCTGCAGCAGCCAGTTTCTGTTTCAGAGAAGAAGAAGACTCGCAATATTGGGCCTAAAAGTAAGAGGTTGCACATCGACAATGATGATGCCATGGAGTTGAGACTTACATGGGAAGAAGCACAGGACTTGCTTCGTCCGCCACCTAGTGTCAATCCAAGCATTGTCACAATAGAGGACCAAGTATTTGAAGAATATGATGAACCGCCAGTTTTTGGAAAGAGAACTATGTTCAGTGCCTGTTCATCTGGGGGGAAGGAGCAATGGGCTCAATGTGATGATTGTTCTAAATGGCGAAAGCTGCCAATTGATGCTCTTCTTCCTCCCAAGTGGAATTGTTCTGAAAATATTTGGGATGCAAGCAGGTCTTCATGTTCTGCACCGGAGGAGCTGAATTCAAGGGAATTAGAAAATCTTCTGAAAACCAACAAAGATTGTAAAAAGCGAAGAATTCTAGAGAACAGTAAGCCAATCCAAGAACATGAACCTTCTGGATTAGATGCTCTTGCTAGTGCTGCGGTTTTAGGAGACAACCTTGTTGACCCTGCTGAGTCATCAGCTGGAGCCACCACCAAACATCCTAGACACCGTCCAGGCTGCTCTTGCATTGTGTGCATTCAGCCCCCAAGTGGAAAGGGGAGACACAAGCCAACATGCACCTGCAACGTGTGTATGACCGTGAAGCGCCGGTTCAAAACCCTTATGCTACGAAAGAAGAAGCGCCAATATGAACGCGAAGCCGACACTGCTCGGAAGGATCCGATTCCCCAAAGAGAAGAGTCAGATGCCAAGGGAGCTTCAAGAGATAATCCAAGTCATTCAGAGAAAGAGGGAGGAATAAACAAAGGTCAACAATACCAGGTGGGCGAGTCCAGTGCCGGACAAATAGACCTGAATTGTCATCCCAACCGCGATGACATGCTGGCGGATACAACAGTACTTAACATGTCTAGTCCTCTTGAAACAACAAACAATGAGGTAAGGGACTATATGAATCAAAATGGTCTAAGAAGCATAAATAGTGAACTGCAGGCTACTCAGCAATCTTCTTTACTCAGTCAATCTAATGGAGAAGGTCAGAGATACTTCCCTGATGAAGGGTGCTTTGCATCCATTGTCTGGAAGAGGGAAAGAAAAGATGAGGTCCACATTAATGCCAATCAAAGTCAAAACAAACTCTCTTAA 2739 0.4476 MGSDICVNGSCCFHEWKKGWPLRSGGFAQLCTKCGFMEEWKHDVIDPLSSNEYSVFCNKFHCQDTGWRECNFCSKPIHCGCIVSASLFEYLDFGGIGCASCVNASQLRLMRNPENPNGSVSSTKNNASDQHSAPIYGRQIVGSVDEGKLMEFCRIVEASESSCWNHAQRDGTVSCDGQNSKEVTLREVDTGFSNVMKPSVQSLTFATLENNRSAWEIKNRHESTAQPSLNMYLGNPSGNNSVLPSAGEIIEGRLDGKASPFQQRSRPILLPKPMKTGRTMNLETDKGTTSQARIARPPAEGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISQSEGLPLQIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGKLVMGFRKATNSADTQDASTSGQSNGVSTTGTAFSGGTENLPSGSNYAEADLLQSMKGNGEPNLNGHADHMHLGTGAAGMLKTENCEMTNNHSLQQPVSVSEKKKTRNIGPKSKRLHIDNDDAMELRLTWEEAQDLLRPPPSVNPSIVTIEDQVFEEYDEPPVFGKRTMFSACSSGGKEQWAQCDDCSKWRKLPIDALLPPKWNCSENIWDASRSSCSAPEELNSRELENLLKTNKDCKKRRILENSKPIQEHEPSGLDALASAAVLGDNLVDPAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQYEREADTARKDPIPQREESDAKGASRDNPSHSEKEGGINKGQQYQVGESSAGQIDLNCHPNRDDMLADTTVLNMSSPLETTNNEVRDYMNQNGLRSINSELQATQQSSLLSQSNGEGQRYFPDEGCFASIVWKRERKDEVHINANQSQNKLS* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0403 912 Pfam B3 DNA binding domain 335 434 IPR003340 GO:0003677
Dod05g0403 912 Gene3D - 604 660 - -
Dod05g0403 912 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 865 - -
Dod05g0403 912 MobiDBLite consensus disorder prediction 757 794 - -
Dod05g0403 912 SMART B3_2 335 435 IPR003340 GO:0003677
Dod05g0403 912 MobiDBLite consensus disorder prediction 437 471 - -
Dod05g0403 912 MobiDBLite consensus disorder prediction 520 541 - -
Dod05g0403 912 ProSiteProfiles Zinc finger CW-type profile. 601 651 IPR011124 GO:0008270
Dod05g0403 912 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 865 - -
Dod05g0403 912 MobiDBLite consensus disorder prediction 756 800 - -
Dod05g0403 912 ProSiteProfiles B3 DNA-binding domain profile. 335 436 IPR003340 GO:0003677
Dod05g0403 912 SUPERFAMILY DNA-binding pseudobarrel domain 333 435 IPR015300 -
Dod05g0403 912 Pfam CW-type Zinc Finger 606 648 IPR011124 GO:0008270
Dod05g0403 912 CDD B3_DNA 333 434 IPR003340 GO:0003677
Dod05g0403 912 MobiDBLite consensus disorder prediction 272 293 - -
Dod05g0403 912 Gene3D - 313 440 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0403 Dod-Chr5 5479269 5486676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0403 1 827 B3 DNA Binding Superfamily AT2G30470 48.876 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod05g0403 B3 3.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0403 - - gmx:100789848 1429.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0403 05 5479269 5486676 Dod05g0403 05 5479269 5486676 ECH