Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0397 ATGTCGTATGTGCCCCCACACTTGAGGAACTCCACCACCACCACCACTGTCGCCGCCGCCAACACCACTAGAACCCTAGACAACAACCTTAATCATCTCACCAAGCTCGCATTGCCTTCTTCCTCAAACTCACTCTCTCGCTCCGACAGCAACAATAACAACAACAACAGCAACAGCTATAACAGCAACAATAATTCTCCGTCCTATGCCTCTCGCCGGAGCTCCGCTGCTCCTTCGCCGTCGAGGATTCTCGCCGCTCCTGACCCCGTCTTCCCTCACTGGCAGCCATCCGAGCGCGTTTCCCGCATGAGCCCTGACCAGATTGAAGAAGTCCGCTTGCGACTTGATGTTACTGTTGCTTCTGATTCTCCAGCTGCACCTGCACCTGCACCAATAGAATCATTTACTGATATGTGTTTGCATCCCAGTATCATGAAGGATATCGCATATCATGAATACACCAGGCCAACTTCGATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGAGATCTATTGGGTTGTGCTGAGACTGGTAGTGGGAAAACTGCAGCTTTCACGATTCCTATGATACAGCATTGCTTGGCTCAATCTCCAATTCGGCGTGGTGATGGTCCTCTGGCATTAGTTTTGGCTCCTACCAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTCTTGAGTCCTTTAAATCTGCCATAGTTGTGGGTGGAACTAACATTGAAAAGCAGAGGTCTGAGCTAAGAGCAGGAGTTGAAATAGCAGTTGCCACCCCTGGAAGATTTATTGATCACTTACAACAAGGAAATACTTCTCTTTCTAGAATTTCTTTTGTTGTTCTGGACGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAAATAAGAGAGATAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCGACTATGCCTGTGGAGATCGAAGCATTAGCAAAGGAGTACTTGGCTAGCCCTGTGCAAGTGAAGGTTGGACAAGTTAGTAGCCCAACAACAAACGTTTCACAAACTCTTGTGAAGGTCTCTGAGAATGAGAAGATTGATCGACTTCTAGATTTGCTTGTAGAGGAGGCATCACAGGCTGAAAAGTGTGGCCATCCGTTTCCATTAACAATCGTGTTTGTTGAAAGAAAGACAAGATGTGATGAAATTGCTGAAGCACTAGTAGCTCAAGGATTATCTGCTGTTTCTCTTCATGGTGGCCGCAGTCAGAGTGAAAGAGAGGCTGCCCTGCATGATTTTCGGAGTAGCTCCACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCGGGATCAACTGGCCTAGCCACTTCATTTTATACTGATCGTGACATGTTTCTTGTGGCAAATATAAGGAAAGCAATTGCTGATGCTGAATCTGGGAACACCGTGGCATTTGCAACTGGAAAGGTTGCTAGAAGGAGGGAGAAAGAAATAGCAGCTGCTCAAAAAGAGGCAAATATTGCTTTATCCACACACACGGGATTGGTAGCTGGTGCAATTAACATCGAGGATAAATATAAATTCATGGTTGCTGCCTCAAACATTAAAAGAGTAGGTGCAGCAGATAGTGCTTGGGATGATTAA 1737 0.4594 MSYVPPHLRNSTTTTTVAAANTTRTLDNNLNHLTKLALPSSSNSLSRSDSNNNNNNSNSYNSNNNSPSYASRRSSAAPSPSRILAAPDPVFPHWQPSERVSRMSPDQIEEVRLRLDVTVASDSPAAPAPAPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQSPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESFKSAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREIMRNLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGQVSSPTTNVSQTLVKVSENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQSEREAALHDFRSSSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTVAFATGKVARRREKEIAAAQKEANIALSTHTGLVAGAINIEDKYKFMVAASNIKRVGAADSAWDD* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0397 578 Pfam DEAD/DEAH box helicase 157 327 IPR011545 GO:0003676|GO:0005524
Dod05g0397 578 CDD SF2_C_DEAD 352 490 - -
Dod05g0397 578 Gene3D - 93 344 IPR027417 -
Dod05g0397 578 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 522 IPR001650 -
Dod05g0397 578 SMART helicmild6 400 481 IPR001650 -
Dod05g0397 578 Coils Coil 219 239 - -
Dod05g0397 578 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Dod05g0397 578 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 340 IPR014001 -
Dod05g0397 578 SMART ultradead3 152 355 IPR014001 -
Dod05g0397 578 Gene3D - 346 538 IPR027417 -
Dod05g0397 578 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 43 542 - -
Dod05g0397 578 MobiDBLite consensus disorder prediction 39 105 - -
Dod05g0397 578 MobiDBLite consensus disorder prediction 39 78 - -
Dod05g0397 578 CDD DEADc 144 341 - -
Dod05g0397 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 501 IPR027417 -
Dod05g0397 578 Pfam Helicase conserved C-terminal domain 364 481 IPR001650 -
Dod05g0397 578 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 43 542 - -
Dod05g0397 578 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 286 294 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0397 Dod-Chr5 5357970 5366923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0397 133 503 Eukaryotic Initiation Factors Gene Family AT1G72730 35.733 1.36e-69 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0397 K12823 - gmx:100787545 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0397 05 5357970 5366923 Dod05g0397 05 5357970 5366923 ECH