Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0393 ATGTCCGTACAATCGACCCTGGATCTTCGGAATCTTACGATTTCAACATCAAGGCCCGATTTTGAAGGCGACCCACCATGCAAAACCATCAAAAAGCTTCAACCAACAAAGAAGCTCCTCCGAATCATACTCACAGATCACGACGCAACCGATTCAGACTCTTCCGAAGATGAACAAGAGAAGAAAAACCGATCAAGGGTAAAAAGGGAAATCATCACCCACCACATCACCAAGCATGTTCCTTTCTCACACTGCTCTCCATCGTCAATTTCTTCACCATCTTCTCCTTCAGTCGGGTCGGCTCGAGATCCGAAAAATTCGACCCGGTTTAAGAGACCCGTGAAACGAACCGTTTCGAGCTGCTCCGCCGCTCGCCGCCGCGGTGGGAGGTTTCGCGGAGTCCGGCAGAGGCCGTGGGGACGGTGGACGGCGGAGATCCGTGACCCGACCCGACGGAAACGGATCTGGCTTGGGACATTCGACACGGCGGAGGAGGCCGCCGCCGTGTACGATGCCGCGGCGGTGAAGCTGAAGGGCCCCTCCGCAATCACCAACTTCCCCCACGGGGGCACCGCGGAGACGGAGGCGGTGGTTTCCGGTGATAGTTTTACGGCGGTTTCTGGCGAAAGTTTTGCGGCGGCTTGCGGTGACGGTTTTGAGTCTCCGACGTCGGTTTTGGCTTACGATTACCGTTACGGTGGCGGAGAGTCCACGGCGTTTGAGGGTCTCCGTTACGGCGACGTGGACGCACTCGGGTTCGACATCGACGTGCCGCTAAGTTTAACGGACGTTAACTCGGTGCTGATGAGTCAGCGGTTTGTGAAAGAAGAGTTTGGCGAGTTTGACCCGGACGAGTTCTTGACGTGGCCCGATTAA 876 0.5616 MSVQSTLDLRNLTISTSRPDFEGDPPCKTIKKLQPTKKLLRIILTDHDATDSDSSEDEQEKKNRSRVKREIITHHITKHVPFSHCSPSSISSPSSPSVGSARDPKNSTRFKRPVKRTVSSCSAARRRGGRFRGVRQRPWGRWTAEIRDPTRRKRIWLGTFDTAEEAAAVYDAAAVKLKGPSAITNFPHGGTAETEAVVSGDSFTAVSGESFAAACGDGFESPTSVLAYDYRYGGGESTAFEGLRYGDVDALGFDIDVPLSLTDVNSVLMSQRFVKEEFGEFDPDEFLTWPD* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0393 291 SUPERFAMILY DNA-binding domain 130 188 IPR016177 GO:0003677
Dod05g0393 291 PIRSF PTI6 7 291 IPR017392 GO:0003700
Dod05g0393 291 Gene3D AP2/ERF domain 129 188 IPR036955 GO:0003700|GO:0006355
Dod05g0393 291 MobiDBLite consensus disorder prediction 82 104 - -
Dod05g0393 291 ProSiteProfiles AP2/ERF domain profile. 130 187 IPR001471 GO:0003700|GO:0006355
Dod05g0393 291 MobiDBLite consensus disorder prediction 48 67 - -
Dod05g0393 291 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Dod05g0393 291 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Dod05g0393 291 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 34 231 - -
Dod05g0393 291 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 34 231 - -
Dod05g0393 291 SMART rav1_2 130 193 IPR001471 GO:0003700|GO:0006355
Dod05g0393 291 MobiDBLite consensus disorder prediction 81 129 - -
Dod05g0393 291 Pfam AP2 domain 130 179 IPR001471 GO:0003700|GO:0006355
Dod05g0393 291 CDD AP2 138 188 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0393 Dod-Chr5 5183440 5185733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0393 38 228 AP2-EREBP Transcription Factor Family AT4G27950 41.753 1.28e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod05g0393 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0393 K13434 - gmx:102660028 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0393 05 5183440 5185733 Dod05g0393 05 5183440 5185733 ECH
Dod05g0393 05 5183440 5185733 Dod08g0927 08 11346315 11347209 PCT