Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0381 ATGGGGAGAAGACCAGCGAGGTGTTACAGACAGATAAAGAACAAGCCATACCCAAAATCCCGGTTCTGCCGTGGTGTACCAGACCCCAAAATCCGAATCTATGATGTTGGAATGAAGAAAAAAGGTGTGGACGAGTTCCCATTCTGTGTCCACCTCGTGTCATGGGAAAAAGAAAACGTTTCCAGTGAGGCACTGGAGGCTGCTCGCATTGCCTGCAACAAGTACATGGCAAAATCCGCAGGAAAGGATGCTTTCCACCTCCGTGTAAGGGTGCACCCTTTCCATGTTTTGCGGATCAACAAGATGCTGTCTTGTGCTGGAGCTGATAGGCTCCAAACAGGGATGAGGGGTGCATTTGGGAAGCCACAGGGGACCTGTGCAAGGGTTAATATTGGCCAGGTGCTGCTCTCTGTTCGGTGTAAGGATAGTAGCAGCCACCATGCTCAGGAAGCTCTGCGCCGCGCCAAGTTCAAGTTCCCTGGCCGCCAGAAGATCATTGTCAGCAGGAAGTGGGGATTTACTAAGTTCAGCCGTGCTGACTATTTGAAGTTGAAGTCTGAGAACAGAATTGTGCCGGATGGTGTCAATGCCAAGGTTCTTGGCTGCCATGGACCTTTGGCAAATCGTCAGCCTGGAAGAGCTTTCTTGCCAGCTTTTGCTTAG 663 0.5083 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRCKDSSSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKLKSENRIVPDGVNAKVLGCHGPLANRQPGRAFLPAFA* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0381 220 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 219 - -
Dod05g0381 220 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Dod05g0381 220 PANTHER 60S RIBOSOMAL PROTEIN L10 1 219 IPR001197 GO:0003735|GO:0005840|GO:0006412
Dod05g0381 220 Gene3D Ribosomal protein L10e/L16 1 215 IPR036920 GO:0003735|GO:0005840|GO:0006412
Dod05g0381 220 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Dod05g0381 220 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Dod05g0381 220 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Dod05g0381 220 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Dod05g0381 220 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0381 Dod-Chr5 5023465 5026541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0381 1 218 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 88.532 6.47e-145 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0381 K02866 - gmx:100779884 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0381 05 5023465 5026541 Dod05g0381 05 5023465 5026541 ECH