Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0347 ATGGCGGACGACAGACGCAGAGACCCACCCGCATTGGAGCCGCCGGAAAATCTCCGGTGCACCCGTAACGACGGCAAGAAGTGGCAGTGCTCCCACTGGCGTATCCAAGACCAAGTCTACTGCGAGCACCATTTCATCTATTCTGCTCTCAGAGCCACCAAGAACACCACCATCACCACCACCATAACAACAACAACGACCAAACACAACAACGCTCAAGAAGAAGAATCACAATCACAATCATCATCAAACAACGACGACGATGATGATGAGGAAGAAGAAGTTCAAGTTGTTCCCCGGAAGAAGAAGAATCGGAGCGTGAACAGGTCCAAAAAACCCAACAAGAAAGCCCGTGCTGCTATTAAGGGTAGAAAAAAAAGGGTTTTGAATTTGGGTAAAGAGGGTAAGAAGGACGCGTCTAAGAAGGCTCTAGAAGATGAAGAAGAAGAAGAAGTATTTCTTCCCAATAAGAAGAATAGGAGACGGGTGAACAATTCCATTTCCAACAAGGCCCGTGGTGCAATCGAAGAAGACAAGACTAGGGTTTCGGTTTTGGGTAAAAGGAGGAGGAACAGTTCCATTAGGGTTCTAGAAGGTTCCAAAGAAGAAGAATTAGAAGAAGAAGAGCTTGTTCCTAGGAAAAGGTCCAAGCTTGGTGGTGGAACTGGAAGCACCAAAAAGGAGGTCCTTAAGAAGAATAAGAAGAATTTGAAAGTGAAGGTGGAAGAAGAAGGAGAAGATGGGGAAGAGGGGGGTGAAGGAAGAATGGACAGGAAAGCTCAGAGCAGAGAGAGGAACAAGAGATTTCTTCAGTTAGTTGTTTATGAGAGTGATGGTGATGGTGATGGTGATGGTGATAGTGATGAAACCTTGAGGGTGGTGAGAAGGTCCAAGAATGGAGAGGGAAGAAGTGCTGTTGTGTCTGAGTCTCAGATGTGTCATCAGTGTTTCAAGAGTGATTGGAGGGTTGTTCGCTGTCAAAAGTGCACCACCAAACGCTACTGTCCTACTTGTATAAGGAGATGGTATCCACAGATGTCTAAGAAGATAATAGCAGAATCTTGTCCATGTTGTCGAGGCAATTGTAATTGCAAGGCATGTTTACGTAGAAACGATGTGCATGAGGATTCTGGAGATTCAGGAGTGCCTCTAGACCAAGATGAAAAGATTCGGCATATTAAGCATTTGGTGCAAGCATTGTATCCTTTCCTGGAGCAATTAAACCATGAACAGCAGTTGGAAATGGAGATGGAAGCAAACATTAAAGGGATATCACTTTCAGATGTAGAATTAAACCAAATTGTTTGTTCTGAAAATGAACGCATTTATTGCAACAACTGCAAAACCTCTATCATTGATTTTCACAGGAGCTGCCCCAATTGTTCATATGATCTTTGCCTTACTTGTTGCCGGGCTGTTCGTTGCAATTTCTTACAAGAGGAAATAGTTGAAAATAATATAGATGCTTCGAATGCTAATTTGGAAAATGGAGATCTGCTCTCATGCAAGGAAGAACCACCAGATATTTGTCCTGAACCAATTTCCAATGATGCTGTGAGACCAAGTAATGTGTGGAGGGCAATGAAAAATAGTGTCATTCCCTGTCCACCTAATGATAGTGATGGTTGTGGACACCAACATCTTGAGCTGAAGTGCATATTTGCACAAAATTGGATTTCAGAGTTAAAGGAAAAAGTGAAAAGATTAGTTGAAGTACACAGATTAGATGCTCTGCCCACAGTTTCTGCAGAGTGTAGTTTCTGCCTCAAATCACTTGACGAGATTGATTCCAGCAACAAGAATTTGCGAAAAGCTGCCTCTCGAGAAGACCCAAGTGACAACTTTTTGTATTGTCCTTTGTCGAGTAATGTTGAATATGGCAATCTGGAACATTTCCAGGGCCATTGGATTAAGGGAGAACCAGTTATTGTTAGGAATGCTCTTGAGTTAACCTCTGGCTTAAGCTGGGAGCCAATGGTAATGTGGCGTGCATTACGAGAAATAACTTATCAGGGTTCCAACCATTTGAAAGAGAAAGCAATTGATTGCCTGGATTGGTGTGAGGTTGAAATAAATATCCATCAATTTTTCAAGGGGTACTCAGAGGGCCGTAATCATTCTGACTTTTGGCCTGAGATGCTCAAGCTCAAAGATTGGCCCCCGTCTACTTTATTTGAGCAGAAGTTACCGCGCCATGGCTTGGAGTTCATTAGTGCCTTGCCCTACAAGGAGTATACACATCCTCGCACTGGATTTCTTAACATGGCCACAAAGTTGCCAGAAACATCTTTAAAACCTGACTTGGGGCCAAAGACGTATATAGCATATGGCTTTGCTGAAGAACTTGGACGTGGAGATTCTGTGACCAAGCTTCATTGTGACATGTCAGATGCGGTGAATATCTTGATGCATACAGAGGAAGTGACCCTTACTTCTGAACATCTCTCCATTATAGAGACATTGAAACAAAAGAAAGCTGAGGAAGACAAACGAGAACTCTTTGGGTGTCTGAATGAAGGTAATTCTGTGGTGAAATTTAACTTAACATTAGGAGAAAACATTTCCGCAGCAGATGCTTTGTCAAAAATGGAAAATGATGAGTCTGACAGAAAGGCGGCAGCTGTTAAACCACCAAGTGATGGCGTTCTTGAGAAAAGTGGTGAGGCTGTGGCTTCTGATGGGGAACCAATTTCATTTACACCTGAAGTTGGGATTCCTGTGGGTGCTCTAGTATTGCCTGAGAATATCAGCTTAAATTCTTCAAGTGCAGGAGTTGATACTAGTGAGAAAGATCTTCTGAAGGAGGATGAGAAGGAGCTTAGTAAGTGTTATGTTAAAGAGGTTGGTGTTGAAGCTAAGGAGAGTTGGTGTGGTGTTATGGATATTAAAGTTGAAGAAGGTAATGAAGATTTTAGCTCGTCAGTTTCTAGGAGAAGAAATGATGATGTGGAGGATGTCATTACTGACAAATTAGTAGGAAATCCTGGAATTTCATTGGAAAATGAAATTGCTGACATTCTAAAGCCGGAAGAAGGGAATATAATTGTTGGGAGTGAAAACAAGGTAGTTAGATCATCAGATGATTTAGATATGAATTCAGAATTATATGCCTTGAGTACTGAGTGGCAAATAGAAAAAATGGACTCAAAGGAGGAAAATCCCGGGGATGTGAAAAATGCTGATACTGTTTTCTCCAGTGCGCTTACTGTAACAAATGAGGTGCTACAACAGGATGAGGGTTGTATTAGTCAACCTGAGGATTCTGGAAATGAGCATAGTGGACAAGAGAATGGAGGGGCTCTCTGGGATATCTTCCGGAGACAAGATGTGCCCAGGCTTGAGGAATACCTTAGAAAGCATTATAAGGAATTCAGGCATGTCCATTGCTCTCAAGTGGAAAAGGTTTTTCATCCCATTCACGATCAAGTTTTTTATCTGTCTTCTCATCATAAAAGGAAGCTCAAGGAAGAATTTGGAGTTGAACCTTGGACTTTTGTGCAAAACCTTGGTGAGGCTGTCTTCATACCTGCCGGTTGTCCCCATCAAGTTAGAAACTTGAAGTCATGCATAAAGGTTGCTCTGGATTTTGTCTCTCCTGAAAATATACAAGAGTGCATTCGTCTGACTGAGGAATTTCGCACACTTCCCTCATTTCATAAAGCAAATGAAGATAAACTTGGGGTGAAGAAAATGTGTCTCCATGCATTAAGCAAGGCTGCGGAAGATTTGGAGGAGCTTGTAGAATGA 3747 0.4227 MADDRRRDPPALEPPENLRCTRNDGKKWQCSHWRIQDQVYCEHHFIYSALRATKNTTITTTITTTTTKHNNAQEEESQSQSSSNNDDDDDEEEEVQVVPRKKKNRSVNRSKKPNKKARAAIKGRKKRVLNLGKEGKKDASKKALEDEEEEEVFLPNKKNRRRVNNSISNKARGAIEEDKTRVSVLGKRRRNSSIRVLEGSKEEELEEEELVPRKRSKLGGGTGSTKKEVLKKNKKNLKVKVEEEGEDGEEGGEGRMDRKAQSRERNKRFLQLVVYESDGDGDGDGDSDETLRVVRRSKNGEGRSAVVSESQMCHQCFKSDWRVVRCQKCTTKRYCPTCIRRWYPQMSKKIIAESCPCCRGNCNCKACLRRNDVHEDSGDSGVPLDQDEKIRHIKHLVQALYPFLEQLNHEQQLEMEMEANIKGISLSDVELNQIVCSENERIYCNNCKTSIIDFHRSCPNCSYDLCLTCCRAVRCNFLQEEIVENNIDASNANLENGDLLSCKEEPPDICPEPISNDAVRPSNVWRAMKNSVIPCPPNDSDGCGHQHLELKCIFAQNWISELKEKVKRLVEVHRLDALPTVSAECSFCLKSLDEIDSSNKNLRKAASREDPSDNFLYCPLSSNVEYGNLEHFQGHWIKGEPVIVRNALELTSGLSWEPMVMWRALREITYQGSNHLKEKAIDCLDWCEVEINIHQFFKGYSEGRNHSDFWPEMLKLKDWPPSTLFEQKLPRHGLEFISALPYKEYTHPRTGFLNMATKLPETSLKPDLGPKTYIAYGFAEELGRGDSVTKLHCDMSDAVNILMHTEEVTLTSEHLSIIETLKQKKAEEDKRELFGCLNEGNSVVKFNLTLGENISAADALSKMENDESDRKAAAVKPPSDGVLEKSGEAVASDGEPISFTPEVGIPVGALVLPENISLNSSSAGVDTSEKDLLKEDEKELSKCYVKEVGVEAKESWCGVMDIKVEEGNEDFSSSVSRRRNDDVEDVITDKLVGNPGISLENEIADILKPEEGNIIVGSENKVVRSSDDLDMNSELYALSTEWQIEKMDSKEENPGDVKNADTVFSSALTVTNEVLQQDEGCISQPEDSGNEHSGQENGGALWDIFRRQDVPRLEEYLRKHYKEFRHVHCSQVEKVFHPIHDQVFYLSSHHKRKLKEEFGVEPWTFVQNLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPENIQECIRLTEEFRTLPSFHKANEDKLGVKKMCLHALSKAAEDLEELVE* 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0347 1248 ProSiteProfiles JmjC domain profile. 748 1213 IPR003347 -
Dod05g0347 1248 SUPERFAMILY Clavaminate synthase-like 623 1239 - -
Dod05g0347 1248 SMART cupin_9 729 1213 IPR003347 -
Dod05g0347 1248 MobiDBLite consensus disorder prediction 199 263 - -
Dod05g0347 1248 MobiDBLite consensus disorder prediction 1 25 - -
Dod05g0347 1248 MobiDBLite consensus disorder prediction 65 148 - -
Dod05g0347 1248 MobiDBLite consensus disorder prediction 65 80 - -
Dod05g0347 1248 Coils Coil 227 247 - -
Dod05g0347 1248 MobiDBLite consensus disorder prediction 227 263 - -
Dod05g0347 1248 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 1246 IPR045109 GO:0032454|GO:0033169
Dod05g0347 1248 MobiDBLite consensus disorder prediction 127 148 - -
Dod05g0347 1248 Gene3D Cupin 613 876 - -
Dod05g0347 1248 Gene3D Cupin 1037 1222 - -
Dod05g0347 1248 MobiDBLite consensus disorder prediction 861 896 - -
Dod05g0347 1248 ProSiteProfiles WRC domain profile. 14 58 IPR014977 -
Dod05g0347 1248 MobiDBLite consensus disorder prediction 199 215 - -
Dod05g0347 1248 Pfam JmjC domain, hydroxylase 1092 1196 IPR003347 -
Dod05g0347 1248 Pfam WRC 15 54 IPR014977 -
Dod05g0347 1248 CDD cupin_RmlC-like 1136 1197 - -
Dod05g0347 1248 MobiDBLite consensus disorder prediction 102 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0347 Dod-Chr5 4441696 4456093 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dod05g0347 JmjC 1.4e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0347 K15601 - gmx:100808936 1301.96