Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0340 ATGGATATGGTGGTTGTGTCTAATCCTTCTAGTGTCTTCCGTAGACAGCCAAAACGGCACCTTCTTACAACCGGCTGGAGTGTATTTGTTAGTGCCAAGAGACTCGTCGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTCCTTTTGGGAATACGACGTGCCAATCGCCCACAAACTGTAATGCCTTCATCTGTTCTGTCCAGTGATAGTATGCACATTGGACTTCTTGCAGCCTGCTGCCCATGCTGCAGCAACCAATAG 273 0.4725 MDMVVVSNPSSVFRRQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAACCPCCSNQ* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0340 90 CDD B3_DNA 13 57 IPR003340 GO:0003677
Dod05g0340 90 Pfam B3 DNA binding domain 13 58 IPR003340 GO:0003677
Dod05g0340 90 ProSiteProfiles B3 DNA-binding domain profile. 1 59 IPR003340 GO:0003677
Dod05g0340 90 Gene3D - 6 58 IPR015300 -
Dod05g0340 90 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 84 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod05g0340 90 SUPERFAMILY DNA-binding pseudobarrel domain 12 82 IPR015300 -
Dod05g0340 90 PANTHER AUXIN RESPONSE FACTOR 6 12 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0340 Dod-Chr5 4394433 4395462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0340 12 80 B3 DNA Binding Superfamily AT1G30330 94.203 5.86e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod05g0340 B3 4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0340 - - bvg:104902645 139.428