LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod05g0310	ATGGATTTTGAACCCCAAGAGAGTCTTAGTATTGGTATGCCAAAGTTAAGCTTATCAGATGGAATTGCTTCAAATGGTATTGGTCATTATGCAATCCCAAATGGTACGGGAACAGTGGCTGGTGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAATATCAATAGTAATGTCGAGGACTCTGAATTACGAACCCTATTTGAGCATTATGGGGATATCAGAACTCTGTACACAGCATGCAAGCATAGGGGCTTTGTTATGATATCTTACTATGACATTCGAGCTGCCCGAACTGCGATGCGTGCATTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAGAAAGATATTAACCAAGGAACTCTTGTAGTATTCAACTTGGATCCATCAGTATCAAATGACGACCTTCGTCAAATATTTGGAGATTATGGAGAGGTCAAGGAGATCAGGGAAACACCACATAAGAGGCACCATAAATTTATTGAATATTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAGGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCTAGTCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAGCTGGAGCAAGATGAAGTGTGGACTTTTAGACATCAATTAGGTTCACCATTGGCCAGTTCTCCTCCTGGTAACTGGGCACATTTTGGTAGTCCAGTTGAACACAATCAATTAGGTTCTTTCAGCAAGTCCCCTGGTTTGGGTCATGCTAGCCCTATGAATACCAACCATTTGCCTGGATTGGCTGCAATTCTCTCCCCACATGCATCAACCTCTACCAAGATTGCGCCGATTGGGAAGGACCCTGGAAGGGCTGCAAATCAGATATTTGCAAACTCTGGATCAACGCAAGGAGCAGCTTTTCAGCATTCCATGTCCTTTCCTGAGCAAAAAGTGAATGCAAGTCCTAGGCCTATATCTACTTTTGGTGAATCAAGTTCAAGTTCATCAAGTATTGGAACACTGTCTGGCCCTCAATTTCTTTGGGGAAGCCCAACTCCTTACTCAGAGCATTCAAACACATCTGCCTGGTCTTCATCTTCTTTGGGGCTTCCGTTTGCATCTGGTAGCCAAAAGCAGAGTTTCCCATATACTAATCATCGCAGTTCTTTTCTTAGCTCGGAGCCCCATCATCATGTAGGATCTGCCCCATCTGGCCTTCCTTTTGATGGGCATTTTAACTACTTCCCAGAGTCACCTGACGCTTCTCTCATGAGCCCGGTTGGATTTGGGAATTTAAATCACAGTGACAGGAGTTTTACGATGAACATGGGTACTCATGCATCTGTAGGAGCTGGTGTTGGTCTTTCAGGAAATACTGCTGAAATTGGTTCAGCGAATTGCAGAATGATGTCTCTGCCTAGGCATGGTTCATTGTTCCTTGGAAGCACTTCGTATTCTGGACCAGGAGCAACTAACACCGAGGGATTAGCTGAACGTGGTCGAAGTAGGCGACCTGACAACAATGTGAACCAAATTGATAGCAAGAAGCTGTACCAACTTGATCTCGATAAAATCATCAGCGGCGAAGATACAAGAACTACTTTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTGCTTGCTGCCATTGACGAGTATCACTGTGGTACCTACGACTTTCTCTACTTGCCAATTGACTTTAAGAACAAGTGTAATGTAGGTTATGCTTTCATCAATATGGTGTCTCCTTCACACATCATCCCCTTTTATAAGGCATTTAATGGAAAGAAGTGGGAGAAGTTTAACAGTGAAAAAGTTGCCTCATTGGCATATGCAAGAATACAAGGAAAGGCTGCACTTGTGACTCATTTTCAGAACTCAAGCTTAATGAATGAGGATAAGCGGTGCCGGCCGATTCTCTTCCATTCAGAGGGCCAAGAGACTGGTGATCAGGAACATTTCCTGTCCAGCAATTTAAACATATGCATTCGTCAACCAGATGGGTCTTACTCGGGTGATTTGTTGGAGAGCCCGAAGGGCAACTCGGATGAGAAGCTAGAATAA	2121	0.4328	MDFEPQESLSIGMPKLSLSDGIASNGIGHYAIPNGTGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEHYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGDYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEVWTFRHQLGSPLASSPPGNWAHFGSPVEHNQLGSFSKSPGLGHASPMNTNHLPGLAAILSPHASTSTKIAPIGKDPGRAANQIFANSGSTQGAAFQHSMSFPEQKVNASPRPISTFGESSSSSSSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSSLGLPFASGSQKQSFPYTNHRSSFLSSEPHHHVGSAPSGLPFDGHFNYFPESPDASLMSPVGFGNLNHSDRSFTMNMGTHASVGAGVGLSGNTAEIGSANCRMMSLPRHGSLFLGSTSYSGPGATNTEGLAERGRSRRPDNNVNQIDSKKLYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDEYHCGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQETGDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNSDEKLE*	707

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod05g0310	706	Pfam	RNA recognition motif 2	548	644	IPR007201	-
	Dod05g0310	706	CDD	RRM2_MEI2_like	135	205	-	-
	Dod05g0310	706	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	2	703	-	-
	Dod05g0310	706	SUPERFAMILY	RNA-binding domain, RBD	550	635	IPR035979	GO:0003676
	Dod05g0310	706	Gene3D	-	136	230	IPR012677	-
	Dod05g0310	706	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	138	203	IPR000504	GO:0003723
	Dod05g0310	706	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	53	117	IPR000504	GO:0003723
	Dod05g0310	706	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	51	124	IPR000504	GO:0003723
	Dod05g0310	706	Gene3D	-	39	135	IPR012677	-
	Dod05g0310	706	PANTHER	PROTEIN MEI2-LIKE 2	2	703	-	-
	Dod05g0310	706	CDD	RRM3_MEI2_like	551	636	IPR034454	-
	Dod05g0310	706	MobiDBLite	consensus disorder prediction	504	525	-	-
	Dod05g0310	706	MobiDBLite	consensus disorder prediction	330	353	-	-
	Dod05g0310	706	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	136	209	IPR000504	GO:0003723
	Dod05g0310	706	SUPERFAMILY	RNA-binding domain, RBD	48	211	IPR035979	GO:0003676
	Dod05g0310	706	CDD	RRM1_MEI2_like	50	126	IPR034453	-
	Dod05g0310	706	SMART	rrm1_1	550	626	IPR000504	GO:0003723
	Dod05g0310	706	SMART	rrm1_1	137	205	IPR000504	GO:0003723
	Dod05g0310	706	SMART	rrm1_1	52	120	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod05g0310	Dod-Chr5	3905007	3909525	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod05g0310	46	222	Eukaryotic Initiation Factors Gene Family	AT3G16380	24.747	4.16e-10	60.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod05g0310	-		-	gmx:100812324	1257.28