Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0302 ATGGAGCCTCATCCAAATCAAGCTCATCAAGAAGGATCTTCTTCTCATCAAAAGAAAACGGGAAGAGGGAAAATCGAGATCAAGAGGATTGAGAACACAACCAATAGGCAAGTCACCTTCTGCAAGCGCCGCAATGGTCTGCTGAAAAAAGCCTATGAACTATCTGTTCTGTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCAAGCCGTGGCCGCTTGTATGAGTATGCCAACAACAGTGTCAGAGGAACAATTGAAAGGTACAAAAAAGCATGTGCTGCTTCCTCAAACGCAGAATCTGTGTCTGAAGCTAACACTCAGTTTTACCAGCAAGAATCATCCAAATTGAAAAGACAGATCCGGGAGATTCAAAATCTAAACCGGCACATCCTTGGTGAAGCACTCAGCTCTCTAAGCCTCAAGGAACTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTTTGAGCAGAGTTAGATCTAGAAAGCATGAAACGTTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAGCAGCAACAACAGCAACAGCAACAAAATTTGATGCCAGCTGGAACAATGTGCGAGACCATACCATCACAAACATATGACCGCAACTTCTTTCCTGTGAATCTCCTGGATTCTGATCACCAATACTCACACCAAGACCAGACTGCTCTCCAACTTGTCTGA 750 0.4387 MEPHPNQAHQEGSSSHQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIERYKKACAASSNAESVSEANTQFYQQESSKLKRQIREIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQQQQQNLMPAGTMCETIPSQTYDRNFFPVNLLDSDHQYSHQDQTALQLV* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0302 249 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 16 243 - -
Dod05g0302 249 CDD MADS_MEF2_like 21 97 IPR033896 GO:0000977|GO:0045944
Dod05g0302 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Dod05g0302 249 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Dod05g0302 249 PANTHER MADS BOX PROTEIN 16 243 - -
Dod05g0302 249 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Dod05g0302 249 Coils Coil 179 206 - -
Dod05g0302 249 Gene3D - 32 103 IPR036879 GO:0003677|GO:0046983
Dod05g0302 249 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Dod05g0302 249 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Dod05g0302 249 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Dod05g0302 249 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Dod05g0302 249 MobiDBLite consensus disorder prediction 15 29 - -
Dod05g0302 249 Coils Coil 140 160 - -
Dod05g0302 249 SUPERFAMILY SRF-like 21 96 IPR036879 GO:0003677|GO:0046983
Dod05g0302 249 Pfam K-box region 104 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod05g0302 249 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod05g0302 249 Coils Coil 106 129 - -
Dod05g0302 249 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0302 Dod-Chr5 3807347 3816231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0302 10 249 MADS-box Gene Family AT3G58780 68.675 3.60e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod05g0302 K-box 5.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0302 K09264 - gmx:100792224 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0302 05 3807347 3816231 Dod08g0345 08 3760716 3767531 PCT