Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0281 ATGTCCCCAACCTTCTTATTCGAACCCCCAAGCGACGAAGAAGAGATCCAACACTCCGAAGAGGAAGAAGAAGAGCAAGAATCAGAATCAGAAGAATCAGAAGAGCAAGAAGAAGGAAAAGAAGCTTCTAGAAGCTCGAAGGAGAAGAGGAAGAGTAAGACACAGTCCCCATGGGACTTCGCGAAGTACACGGAATCGGTGGCGGAGGAACACGCCCGACGGAGCACCACCTCCGTCGACGACAAGATCTCCAAGGCCCTCAGGCAACGTTCCATCCCTCTCGCCCTTCCCTCCCTAAACGACGACGTTCACAACAACGACAGCTCTGACTCAGAAGAACTAGATAATAAACAAGAAGATTATAGACCAGAAGAAGAAGAAGATGAAGAAGAGGGTAATGCTGGTGACAGCAAGTCCTTTTTTGCTCCTTCTGATGGAGCTTCTTTCCATGCTGATTCCTTCTTGCAGCTCAATTTGTCAAGGCCTTTGCTCCGGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACACCAATTCAGGCCGCCTGTATACCATTGGCATTGACTGGTCGCGATATATGTGGAAGTGCCATTACTGGGTCAGGGAAGACAGCTGCATTTGCACTTCCCACATTAGAGAGGTTGTTGTTCCGTCCAAAACGCATGCATGCAATAAGGGTCCTCATTCTTACACCAACTAGAGAGTTGGCAGTTCAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTTTGTCAACAAAGGTGCAAGAGGCTGCCTTGAGATCAATGCCAGACATTGTTGTTGCAACCCCGGGACGTATGATAGACCATTTACGCAATTCTATGTCAGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTTTTAGAGCTTGGATTTAGTGCTGAAATTCACGAACTTGTCCGCATGTGTCCTAAAAAACGGCAGACGATGCTATTTTCAGCTACCATGACTGAGGAGGTTGATGAACTAATTAAACTGTCCCTGTCAAAACCCCTGCGTCTTTCTGCCGACCCATCTGCAAAACGACCCACAACCTTGACTGAGGAAGTGGTTAGGATACGAAGATTGCGTGAAGTAAATCAGGAAGCGGTTCTTCTTGCATTGTGCTCCAAAACTTTTACTTCTAAAGTGATCATATTCAGTGGAACAAAGCAAGCTGCACATAGGTTGAAGATTATATTTGGATTAGCTGGCTTGAAATCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAGCGTCTTGAAGCTTTGGAACAGTTTAGGAGGCAGGAAGTAGACTTTCTGGTTGCAACTGACGTGGCTGCTCGTGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGCCCCCGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGGGCTGGAAGAGAAGGATATGCTGTGACATTTGTGACTGATAATGACTGGTCACTTTTAAAAGCCATAGCAAAAAGGGCTGGGGCAAAGCTTAAGAGCCGCATTGTAGCAGAGCAATCCATACTTAAATGGTCTCATATAATTGAGCAAATGGAGGATGAAATTGCTGAAGTACTTCAGGAAGAGAGGGAAGAAATAGCCTTGAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCACATAAGGAAGAAATATATTCTCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAAAAGAAGCTTGCAGCAAAAGCAGCAAAGGCATCTATTGATAAGGAAAAGAGTTCCGGAAAGGAGGTACTTAGTGCTCAGCAAGCTGAAGACCTCAGAATGAAGGAAAAGAGGAAGCGAGAGCGAGAGAAAAATTTGCCCAGAAAGAAGCGTAGAAAATTGGAAGCGGCTAGAGAGATGTTGGAGGATGAAGAATATGGTGATGACAAGCCAGAGGCTAAGGGGACAAATAAGAAAGAAAAGGGTGGACTGTCCCTAGTTGATGTTGCTTATCGACGAGCAAGGGCGGTAAAGGCTGTCAAGAGGGCACTAGATTCTGGCAAGATTGTACAGAAGAATAGAAAGAAACCTGATCGTCCTTCAAAAAAGACCCCTTCAAGGACAGAGGAGATGCGGGAGCTATTCCAGGCTGACATGAAGGATAGAAAGCAGAAAAGAAGAGGTCTTGGAGCAGGAAAGAAATCCAAGAGTTCGTTCAAAAGCAAATCAAGGTACAAGCGCAAGTAG 2277 0.4572 MSPTFLFEPPSDEEEIQHSEEEEEEQESESEESEEQEEGKEASRSSKEKRKSKTQSPWDFAKYTESVAEEHARRSTTSVDDKISKALRQRSIPLALPSLNDDVHNNDSSDSEELDNKQEDYRPEEEEDEEEGNAGDSKSFFAPSDGASFHADSFLQLNLSRPLLRACEALGYAKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRMCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSAKRPTTLTEEVVRIRRLREVNQEAVLLALCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKSAELHGNLTQAQRLEALEQFRRQEVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDWSLLKAIAKRAGAKLKSRIVAEQSILKWSHIIEQMEDEIAEVLQEEREEIALRKAEMEATKAENMIAHKEEIYSRPKRTWFVTEKEKKLAAKAAKASIDKEKSSGKEVLSAQQAEDLRMKEKRKREREKNLPRKKRRKLEAAREMLEDEEYGDDKPEAKGTNKKEKGGLSLVDVAYRRARAVKAVKRALDSGKIVQKNRKKPDRPSKKTPSRTEEMRELFQADMKDRKQKRRGLGAGKKSKSSFKSKSRYKRK* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0281 758 PANTHER RNA HELICASE 48 283 - -
Dod05g0281 758 MobiDBLite consensus disorder prediction 14 36 - -
Dod05g0281 758 MobiDBLite consensus disorder prediction 37 56 - -
Dod05g0281 758 Gene3D - 98 359 IPR027417 -
Dod05g0281 758 PANTHER BNAA01G17110D PROTEIN 48 283 - -
Dod05g0281 758 MobiDBLite consensus disorder prediction 119 133 - -
Dod05g0281 758 CDD SF2_C_DEAD 369 501 - -
Dod05g0281 758 Gene3D - 377 754 IPR027417 -
Dod05g0281 758 PANTHER RNA HELICASE 308 736 - -
Dod05g0281 758 MobiDBLite consensus disorder prediction 64 87 - -
Dod05g0281 758 MobiDBLite consensus disorder prediction 638 671 - -
Dod05g0281 758 CDD DEADc_DDX27 163 358 - -
Dod05g0281 758 Coils Coil 616 636 - -
Dod05g0281 758 SMART helicmild6 407 492 IPR001650 -
Dod05g0281 758 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 357 IPR014001 -
Dod05g0281 758 PANTHER BNAA01G17110D PROTEIN 308 736 - -
Dod05g0281 758 MobiDBLite consensus disorder prediction 691 758 - -
Dod05g0281 758 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 152 180 IPR014014 GO:0003724
Dod05g0281 758 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 303 311 IPR000629 -
Dod05g0281 758 SMART ultradead3 171 372 IPR014001 -
Dod05g0281 758 MobiDBLite consensus disorder prediction 1 142 - -
Dod05g0281 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 512 IPR027417 -
Dod05g0281 758 Coils Coil 530 577 - -
Dod05g0281 758 MobiDBLite consensus disorder prediction 736 758 - -
Dod05g0281 758 MobiDBLite consensus disorder prediction 712 735 - -
Dod05g0281 758 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 387 531 IPR001650 -
Dod05g0281 758 Coils Coil 11 39 - -
Dod05g0281 758 MobiDBLite consensus disorder prediction 600 676 - -
Dod05g0281 758 Pfam DEAD/DEAH box helicase 176 346 IPR011545 GO:0003676|GO:0005524
Dod05g0281 758 Pfam Helicase conserved C-terminal domain 388 492 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0281 Dod-Chr5 3552123 3564034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0281 140 509 Eukaryotic Initiation Factors Gene Family AT3G13920 33.512 5.66e-51 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0281 K13181 - gmx:100776684 1075.08