Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0272 ATGACGGAGTACCGGTCACCTCCGACAATGAACCTCTGGACCGACGACAACTCCTCCGTCATGGAAGCCTTCATGAGCTCCTCCGACCTCTCCTGCCTCTGGCTCCCTCCTCCCTCCTCCTCCGCCGCCTCCACCACCGCACCAGCACCGGACCATTCCAGAGCCCCTCCGCCACAACCACAACCACCGCCGTTCAACCAAGAAACACTCCAGCACCGCCTCCAGTCCCTAATCGAAGGCGCAAGGGAGGGCTGGACCTACGCCATCTTCTGGCAGTGCTCCTACGACTACTCCTCCGGCTCCACCGTCCTCGGCTGGGGCGACGGCTACTACAAAGGCGAAGAAGACAAAGCAAAGGGGAAGAACACCAAAATGACGTCGTCCACGGACCAGGAGTACAGAAAAAAGATCCTCCGGGAGCTCAATTCATTGATCTCCGGACCTTCCGCTTCAGCGGACGATGCCGTTGACGAAGAGGTCACCGACACGGAATGGTTCTTCCTTGTGTCCATGACGCAGAACTTCGTCAACGGCACGGGCCTCCCTGGCCAGGCATTCTTTAATTCGAGCCCGGTTTGGGTCGCCGGGCCCGACCGCCTGGCGGGCTCGGGCTGTGAGCGGGCCCGCCAGGGGCAGTTGTTCGGGCTGCAAACAATTGTTTGCATACCTTCGTCAAACGGCGTCGTTGAGCTCGGTTCAACGGAGCTTATCTTCCAGAATCCGGATCTGATGAATAAAGTTAAGGTGTTGTTCAATTTTAGCAACAACCCTGAATCGGGAGGATCGTGGCCGTTGAATTCTGCTGATCAGGGAGAGAACGATCCTTCCGCTTTGTGGCTCAACGACCCTTCCACCTCTGCCGGGATCGAAGTCAGAGATTCCGTTAATACCGTTACGACGGTTACCAACGGTAACAACAACAACAACAACAACAACAACAAAGCGTTGCCGTTTGAGACACCTGGTTCAACTTCAAGCACTCTAACCGAAACACCGAGTGTTGTTAACACTGGGAGTAATAGTAATAGTAATAATCAGCGAAGTGCTCAGAATCAGGGGTTTATGACGAGGGAACTGAACTTCTCGAATCCTTTGAAGCCTGAATCTGGTAAGATGCTGAGCTTCGGAGAGAGCAAGACGGGAAATTCGTACAACAATAATGCTAATTTCTTCTCTCAGTCGCAGTTTGTGTCTGATGAGAATAAGAAGAGGAGATCCCCTGCTTCGCGAAGCAGCATTGACGATGGAATCCTCTCGTTTACTTCCGACGTGATCTTACCGGCTTCGAATACTAAGTCTGGTGGCGGTGGCGGCGGCGATTCAGATCATTCGGATTTGGAAGCTTCCGTGGTGAAGGAGGCTGCGGAGCCGGAGAAGAAGCCGCGGAAGAGAGGGCGAAAGCCGGCGAACGGAAGAGAGGAGCCGCTGAATCATGTGGAGGCTGAGAGGCAGAGGAGGGAGAAGCTCAATCAGAGATTCTATGCTCTTAGAGCAGTGGTTCCTAATGTGTCGAAGATGGACAAGGCATCGCTTTTGGGAGATGCTATAGCATACATCAATGAGCTTAAATCGAAGCAGCAAGGGCTGGAATCGGAGAAAGGCGAATTGGGTAAGCAATTGGAGGCTTCCAAGAAGGAATTGGAGCTAGCGAGTAAGAATTCAGGGGCTGCACAGCCGCCGCCGCCGCCGCCGCCGCATGATAAGGATCGCGGTGGTCATGTTAATGGGAAGTTGGTTGATTTGGAGATTGAGGTGAAGATTATTGGTTGGGATGCTATGATTAGGATCCAATGCAGCAAGAGGAACCACCCTGCGGCGAGGCTGATGGCTGCACTGAAGGATCTTGACCTTGAAGTGCATCATGCTAGTGTGTCCGTGGTGAATGATTTGATGATCCAGCAGGCAACGGTGAACATGGGAAGCCGGTTTTACACGCAGGAGCAGCTCATGTTGGCACTTTCGGCCAGAGTTGGCGGCGGCAGCGGTGGCGATGCACGGTAG 2001 0.5387 MTEYRSPPTMNLWTDDNSSVMEAFMSSSDLSCLWLPPPSSSAASTTAPAPDHSRAPPPQPQPPPFNQETLQHRLQSLIEGAREGWTYAIFWQCSYDYSSGSTVLGWGDGYYKGEEDKAKGKNTKMTSSTDQEYRKKILRELNSLISGPSASADDAVDEEVTDTEWFFLVSMTQNFVNGTGLPGQAFFNSSPVWVAGPDRLAGSGCERARQGQLFGLQTIVCIPSSNGVVELGSTELIFQNPDLMNKVKVLFNFSNNPESGGSWPLNSADQGENDPSALWLNDPSTSAGIEVRDSVNTVTTVTNGNNNNNNNNNKALPFETPGSTSSTLTETPSVVNTGSNSNSNNQRSAQNQGFMTRELNFSNPLKPESGKMLSFGESKTGNSYNNNANFFSQSQFVSDENKKRRSPASRSSIDDGILSFTSDVILPASNTKSGGGGGGDSDHSDLEASVVKEAAEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKQQGLESEKGELGKQLEASKKELELASKNSGAAQPPPPPPPHDKDRGGHVNGKLVDLEIEVKIIGWDAMIRIQCSKRNHPAARLMAALKDLDLEVHHASVSVVNDLMIQQATVNMGSRFYTQEQLMLALSARVGGGSGGDAR* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0272 666 MobiDBLite consensus disorder prediction 395 414 - -
Dod05g0272 666 MobiDBLite consensus disorder prediction 299 363 - -
Dod05g0272 666 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 473 522 IPR011598 GO:0046983
Dod05g0272 666 MobiDBLite consensus disorder prediction 451 483 - -
Dod05g0272 666 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 70 251 IPR025610 -
Dod05g0272 666 PANTHER TRANSCRIPTION FACTOR MYC2 12 657 - -
Dod05g0272 666 SMART finulus 479 528 IPR011598 GO:0046983
Dod05g0272 666 PANTHER MYC 12 657 IPR045084 GO:0003700|GO:0006355
Dod05g0272 666 MobiDBLite consensus disorder prediction 299 387 - -
Dod05g0272 666 MobiDBLite consensus disorder prediction 37 67 - -
Dod05g0272 666 CDD bHLH_AtAIB_like 470 546 - -
Dod05g0272 666 MobiDBLite consensus disorder prediction 51 65 - -
Dod05g0272 666 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 476 542 IPR036638 GO:0046983
Dod05g0272 666 Pfam Helix-loop-helix DNA-binding domain 477 522 IPR011598 GO:0046983
Dod05g0272 666 Coils Coil 519 539 - -
Dod05g0272 666 MobiDBLite consensus disorder prediction 549 574 - -
Dod05g0272 666 Gene3D - 465 553 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0272 Dod-Chr5 3440765 3442917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0272 1 658 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 57.080 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod05g0272 bHLH-MYC_N 9.3e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0272 K13422 - gmx:100790854 788.489