Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0249 ATGGGAAGATCTCCTTGCTGTGATGTAATGGGTTTGAAGAAAGGTCCTTGGACCCCTGAAGAAGATCAGAAGCTTGTAAGCTACATTCAAAACCATGGCCAAGGGAACTGGAGGGCTCTTCCAAAACTTGCAGGGCTAAACAGGTGTGGTAAAAGTTGCAGGTTAAGGTGGACAAACTACTTGAGGCCTGGCATCAAGAGAGGGAGATTTTCCCAAGAAGAAGAACAAACAATTCTGAGCCTCCATGCTATCCTAGGAAATAAATGGTCAGCAATTGCAAGCTACCTACCGGGTAGGACAGATAATGAAGTCAAGAATTTTTGGAACACTCATCTGAAGAAGAAGCTGATTCAACAGGGTTATGATCCAATGACACACCAGCCTATAACTTTTGATATCTTGTCAACAATGCCTCAACTCATAGCAGTAGCACTGCGGGCAAATCTCAACGAATTTTTGGACCATAAATCAAATTGGGATCATCACAATGCTGCAATACTACACGAATATGCCTCACAAATAGCCAATTTTCAATGCTTACAACACCACCTCATGAAGCCTCAATCTTCTACCGAAGTTGAGGCCAACAACAACTACTCATTATTAAATTCAACTCAGCTTGAAAACACCATCAACTCATCTTCTCTTGCTAGCAATAACTTCCAATTGTTCAATGATTCCAATAGTTTCTCTTTCTCTCACATGCCTAACTTAGAAACACCTTGTGCCTATGAATCACCATTAAGCAATATTAAGGACATGGTCCAAGTCCCAAAATCCGAGGCTTTATTGTGCCATGGATACAGGTCTCCAAATTCATCACCATGGCTTCTTTCATGCTCAAGCAGTACCACTCAATCTCCTTCCCATGTGGTTCCACTTCTGATGACAGACAATAATAATAACAATATGGCCAATGATTATGGTGTTTCTAGCAATTGGCCCGATCTCTTGCTGCTAGAGGACCCTTTGCTCAATGAAAGTATTTCCTAG 993 0.4159 MGRSPCCDVMGLKKGPWTPEEDQKLVSYIQNHGQGNWRALPKLAGLNRCGKSCRLRWTNYLRPGIKRGRFSQEEEQTILSLHAILGNKWSAIASYLPGRTDNEVKNFWNTHLKKKLIQQGYDPMTHQPITFDILSTMPQLIAVALRANLNEFLDHKSNWDHHNAAILHEYASQIANFQCLQHHLMKPQSSTEVEANNNYSLLNSTQLENTINSSSLASNNFQLFNDSNSFSFSHMPNLETPCAYESPLSNIKDMVQVPKSEALLCHGYRSPNSSPWLLSCSSSTTQSPSHVVPLLMTDNNNNNMANDYGVSSNWPDLLLLEDPLLNESIS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0249 330 CDD SANT 69 112 IPR001005 -
Dod05g0249 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod05g0249 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 314 - -
Dod05g0249 330 CDD SANT 16 61 IPR001005 -
Dod05g0249 330 Gene3D - 13 66 - -
Dod05g0249 330 SMART sant 66 114 IPR001005 -
Dod05g0249 330 SMART sant 13 63 IPR001005 -
Dod05g0249 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod05g0249 330 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 314 - -
Dod05g0249 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod05g0249 330 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dod05g0249 330 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Dod05g0249 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod05g0249 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 61 IPR017930 -
Dod05g0249 330 Gene3D - 68 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0249 Dod-Chr5 3116670 3118297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0249 1 197 MYB Transcription Factor Family AT1G34670 65.482 5.21e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod05g0249 Myb_DNA-binding 8.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0249 K09422 - gmx:100781670 337.035