Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0240 ATGGGTGACAGAGAAAAGTTTGAGCTTGATGGAAAGGAGGATCCTGTGAGTTATTCAACTAGTATGGCCTCTGATTGGAGGTTTGATGGTGCCAACTTTGCAAATTCATCTATGGGGGGTTTGGTTCCAATGGTGTCTTCTTCGTGTACTTCTGCTTCAATGGTGGACTCATCATATGTTACAAACTTCTGGGACCACCCCAATTCCCAAAACTTGGGATTTTGTGACATTAATGTCCATAATAATGGTAGCTCTTCAAATTCAAATGGAATTAGAAAAGATGGGTTTGACTATGCAAGAGGTGGTCATAATCATAGGACACCGGAAATGGGTTGGAACCCTGCTAATTCTATGCTGAAGGGGGATGCTTTTTTCCCAAATGGACCAGGAATGCTTCCCCAGAGTTTGTCTCAGTTTCCGAGTGATTGTGGATTTATTGAGCGTGCCACGAGATTCTCATGCTTCAGTGCAGGGAATTCCGGGGACATGGTGAACTCGTTCGGGATTCCTCAATCCATGAGTCTGTATGCTAGGACCATGGGACCAATGCAGGCAACAGTAGATGCTCTTTCAGGCCATGGATTAAAATCAACACCTGGAGGACAATCTCATGAAAGTGATCTGAATGTAGTTGAAGCTGCAAAAGATGCATCTCAGTCTGTTGAGCATCATAATGGTACTAAAGAAAGGCCACTCCAGGATGATAAAAGAAGTGACAATCATATTGTAATGTCTCAAGATGAAGGGAAACAAGCTCTTGGTGGGTCTGGTAATGAGTCTGATAGAGCAGAATCTAGTGGCCAAGATGATTCGCCAATGTTAGAGTGCACAAGTGGGGAACCTTCTATTAAAGGACTAAACTCAAAGAAAAGGAGAAGAAGTGGACAGGATGCTGATAAAGATAAAGTCAATGGAACTCCTGAACAACCTGGTGAAGCCACAAAGGAGAATTCTGAGAGTCGACAGCAGAAGGGAGACCAACAGCCAACTTCAACAACCAAGGCTACTGGGAAGAATGCCAAGCAGGGTTCTCAAGCATCCGATCCTCCTAAGGAGGGATACATTCATGTTAGGGCTCGCCGTGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTAAGGAGGGAAAAGATCAGTGAAAGGATGAAATTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTCACGGGCAAGGCAGTGATGCTAGATGAAATTATTAACTATGTACAGTCTCTTCAACGACAGGTTCAGTTTTTGTCTATGAAACTTGCTACAGTAAATCCACGAATGGATTTTAATATTGAGGGATTGCTTGCTAAAGAAATTCTTCAGCAACGGCCTGGTCCTTCATCTGCAATGGGGTTTCTTCCAGAGATGTCCATGGCTTTTCCTGCATTGCATCCATCTCAGGCAGGACTGGCTCATCCAACTCTTCCTAGCATGGCTAATTCATCAGATATACTACGGCGGACCATTCAACCACATTTGGCACCCTTGACTGGAGGATTTAAGGAGCCAAATCAGCTTCCTGATGTGTGGGAGGATGAGCTTCACAATGTTGTACAGATGACCTTTCCAACAACTGCTCCACTGAGTAACCAAGACATGGACGGTTCCACGCCTTCAGGTCAAACAAAAACTGAACATTGA 1653 0.444 MGDREKFELDGKEDPVSYSTSMASDWRFDGANFANSSMGGLVPMVSSSCTSASMVDSSYVTNFWDHPNSQNLGFCDINVHNNGSSSNSNGIRKDGFDYARGGHNHRTPEMGWNPANSMLKGDAFFPNGPGMLPQSLSQFPSDCGFIERATRFSCFSAGNSGDMVNSFGIPQSMSLYARTMGPMQATVDALSGHGLKSTPGGQSHESDLNVVEAAKDASQSVEHHNGTKERPLQDDKRSDNHIVMSQDEGKQALGGSGNESDRAESSGQDDSPMLECTSGEPSIKGLNSKKRRRSGQDADKDKVNGTPEQPGEATKENSESRQQKGDQQPTSTTKATGKNAKQGSQASDPPKEGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVQFLSMKLATVNPRMDFNIEGLLAKEILQQRPGPSSAMGFLPEMSMAFPALHPSQAGLAHPTLPSMANSSDILRRTIQPHLAPLTGGFKEPNQLPDVWEDELHNVVQMTFPTTAPLSNQDMDGSTPSGQTKTEH* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0240 550 MobiDBLite consensus disorder prediction 528 550 - -
Dod05g0240 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 361 432 IPR036638 GO:0046983
Dod05g0240 550 MobiDBLite consensus disorder prediction 285 306 - -
Dod05g0240 550 CDD bHLH_AtBPE_like 353 438 - -
Dod05g0240 550 PANTHER BHLH TRANSCRIPTION FACTOR 35 549 - -
Dod05g0240 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 363 413 IPR011598 GO:0046983
Dod05g0240 550 MobiDBLite consensus disorder prediction 217 244 - -
Dod05g0240 550 MobiDBLite consensus disorder prediction 214 352 - -
Dod05g0240 550 SMART finulus 369 419 IPR011598 GO:0046983
Dod05g0240 550 Gene3D - 360 433 IPR036638 GO:0046983
Dod05g0240 550 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 35 549 IPR024097 GO:0006355
Dod05g0240 550 Pfam Helix-loop-helix DNA-binding domain 366 414 IPR011598 GO:0046983
Dod05g0240 550 MobiDBLite consensus disorder prediction 323 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0240 Dod-Chr5 3053819 3058584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0240 12 526 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.654 8.81e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod05g0240 HLH 7.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0240 - - ahf:112795912 797.734