Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0186 ATGGAAAAAGACCAAGATGCTCACTTTCAATCACCTTCAGAGAAAGGCCATCATGATGATGATCACAATCAAAGCAACCGCTTTGATGATCGAGAAGAGTCTCTAGCTAATTGGTACAAAAGCAATGGAAACACCAAGAAGGGTAGTGATGATGGGTCAAGAAGGAGGCTATGCATCAAGTTCAAGGTTACTGGTACTACTACCATGGAAGCATCTCGTGATGATAATAGCAAGAATGAGCATGACCATAAAGTGTGCCATATCTGCAGCAAAACCTTTGGTTCAGGTAAAGCTCTTGGTGGACACATGAGGGTGCATTCCTTATCAAGCAAGAAAGTTGTTCATGAGGCCAAACAGAAAACCAAAAACAACAACAACACTGATTTGGATTTGGCCACTTGTGACCTATGCAAAAGGTGCTTCCCTTCAAAGAAGTCCTTGTTTGGTCACATGAGGTCTCACCCTGAAAGGGTGTGGAGAGGCACTCAACCTCCAAAGGACTCAAATTCCACATTTGATTCTACCCTTTTGAAGGGTTGGTCTGTGACTGCCAGGAGAGGCCGAAGAAGCCTATCTTCTTGCTCCAACAAAACAGCTTCTGAGCCTTTAGAACATGATGATGAGGAGATCGACCAACATATGGAAGACCTAGAAGCAGTGAATGAGCTCATGTTTCTGGCTAATTGGAACCCTGAGAAAGAGTTTGTATCTGAGAAGGACACTTCCAAATTTGATGATGGTGATCAGGTTGAGTTTTCATCATCAGTTTCACTCATCAAGAAGAAGCTCAAGACTGAAGAGAAGCAGCCACTGAGTTATGAAGAGGGGTCAGTGTTGGATTCTCATAATTCTAATGGCAGCACCGTTGGCATGGACATGCGCAAGAAGAACAAGAATAGCAACAAGAAGAAGAAGAAGAAGAAGAAGATGAAATTAACCGATTTAGGAACAGCTGAGCAGAAGAACAAATTGGATAATGGGACAGCCAAAAGGTGCAATGAATGCAGTATATGCAACAAGTCTTTCCCAACCCACCGAGCTTTAGGTGGCCATCTAATAAGCCATAGAAAATCAAATAACATTCAAATTGTGAATGAATCTGGATCAGATGATATGTCTGCTGCCACAGGGGAAGAGAAGAAGAGAACAATCATGCAAGTGGATGAAACTGATGCTGTTGTTGATGATATTATTTGTAACAAGTCTTTCGCAACAGTTCAAGTCCTTGGGGGCCACAAGAGATCTCATTGGACTAGCATGACAGAAGCTCAGTCAGCTCAATCAATTCAACTTGTGGAGAATGGCCAGAATTATCCCACGGTTTTGAGTTTTGATCTTAATGAGCTTCCAGCTATGGATGAGGAAGAGGGTGTTCAATTAGACTTAATCATTCCGGCTGATATTATGGCATCGTCCAGTTATGCTTCGTCTTCTCAGAACTCTGTTACTCATTAG 1455 0.4241 MEKDQDAHFQSPSEKGHHDDDHNQSNRFDDREESLANWYKSNGNTKKGSDDGSRRRLCIKFKVTGTTTMEASRDDNSKNEHDHKVCHICSKTFGSGKALGGHMRVHSLSSKKVVHEAKQKTKNNNNTDLDLATCDLCKRCFPSKKSLFGHMRSHPERVWRGTQPPKDSNSTFDSTLLKGWSVTARRGRRSLSSCSNKTASEPLEHDDEEIDQHMEDLEAVNELMFLANWNPEKEFVSEKDTSKFDDGDQVEFSSSVSLIKKKLKTEEKQPLSYEEGSVLDSHNSNGSTVGMDMRKKNKNSNKKKKKKKKMKLTDLGTAEQKNKLDNGTAKRCNECSICNKSFPTHRALGGHLISHRKSNNIQIVNESGSDDMSAATGEEKKRTIMQVDETDAVVDDIICNKSFATVQVLGGHKRSHWTSMTEAQSAQSIQLVENGQNYPTVLSFDLNELPAMDEEEGVQLDLIIPADIMASSSYASSSQNSVTH* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0186 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 154 IPR013087 -
Dod05g0186 484 ProSitePatterns Zinc finger C2H2 type domain signature. 335 355 IPR013087 -
Dod05g0186 484 MobiDBLite consensus disorder prediction 264 319 - -
Dod05g0186 484 Pfam C2H2-type zinc finger 134 156 - -
Dod05g0186 484 Pfam C2H2-type zinc finger 334 357 - -
Dod05g0186 484 Pfam C2H2-type zinc finger 398 418 - -
Dod05g0186 484 Pfam C2H2-type zinc finger 85 106 - -
Dod05g0186 484 MobiDBLite consensus disorder prediction 1 52 - -
Dod05g0186 484 MobiDBLite consensus disorder prediction 276 294 - -
Dod05g0186 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Dod05g0186 484 Coils Coil 203 223 - -
Dod05g0186 484 SMART c2h2final6 333 355 IPR013087 -
Dod05g0186 484 SMART c2h2final6 84 106 IPR013087 -
Dod05g0186 484 SMART c2h2final6 397 416 IPR013087 -
Dod05g0186 484 SMART c2h2final6 132 154 IPR013087 -
Dod05g0186 484 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 67 388 IPR044653 GO:0003700
Dod05g0186 484 MobiDBLite consensus disorder prediction 1 36 - -
Dod05g0186 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 333 360 IPR013087 -
Dod05g0186 484 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Dod05g0186 484 MobiDBLite consensus disorder prediction 297 311 - -
Dod05g0186 484 Gene3D Classic Zinc Finger 83 154 - -
Dod05g0186 484 Gene3D Classic Zinc Finger 331 416 - -
Dod05g0186 484 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 398 456 IPR044653 GO:0003700
Dod05g0186 484 ProSitePatterns Zinc finger C2H2 type domain signature. 134 154 IPR013087 -
Dod05g0186 484 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 67 388 - -
Dod05g0186 484 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 398 456 - -
Dod05g0186 484 SUPERFAMILY beta-beta-alpha zinc fingers 133 355 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0186 54 168 C2H2 Transcription Factor Family AT2G26940 31.387 3.87e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod05g0186 zf-C2H2_6 1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0186 - - aprc:113859226 281.567