Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0184 ATGCACAGTATCAATTTTTTTTTTTTTTTCCTCCTTTCCTCCCACTTTACCCTTTTCTTTGGCAGGGTTGGTGGTGCTTATGATGATAGACGGTTTGTAGATGAAAGATATCCTAGGGATGCTATATACCAGAGAAATACTTTCCACCGAGACATTTTGGATAGGGATGGGTATCTGCCACCTGGACCTGCTGTTGGACACTGGAATCAATCCAAAAGGAGAGGTTATGATGAAGACTATCCACTTGACAGGGAATCTAGACGTTTTCAGAGGCCTTATCATGAGTCATATAATCAGATCGATGCCTTCAGGGAACGTGATATTGACTCGTACCCAGAATACAATCAGTTTCGGGATGGCTATGGCAGCATTGAAAACTATGGTGAGCGAGGATATGATAAACCTGCCAGGTTTGGAGGACATGACCATGATGATTATGCATATGAGGATTATGGCTACAAGTCCCGTGTTTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGATAGTAATTGGAGGCGGCGTGAATCTCGTGATCGGGAGCGTGATAGAAGAGGCCTAAGCCGGGAAAGAGATAGCCCGCATAGGAGGCATGAGCGTTCTCGTTCCAGGTCCAAGTCCAAGTCCCGGTCCAGGTCTCGGTCTCGGTCCAAATCCCAGTCCCAGTCCCAGTCCCACTCTCGCTCACGCTCCCAATCTCGTGGATATGATGATCATCCAAGATCAAAGTCCCCTCGAGGCCGAAGCCATGGTCGAAGTTACCGTGAAGATAGCTATGGTGACAGTCGATATGATAGAAGTGAAAGGCGCAGGGATCGTGAGGAAAAACGCCAGCGGGAGCATTATTCTGTGGCCCCATCTGCAACTATTGTTGTGAAAGGTCTTTCACAGAAGACAACTGAAGAAGATTTATACCAAATCCTGGCAGAATGGGGGCCCCTTCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCGTCTCTCGGGGATTTGCATTTATTGATTTTCCATCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGATGATGGTCTTACTGTGGATGGCAGAAGGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTCCAGGTCCAGATGGAGCTATGAAATCTGGCCATAATCATAAGAGCATCACAATACCATCTGACTGGATGTGCACCATATGTGGCTACATCAATTTTGCACGTCGGACTTCCTGCTATCAGTGTAATGAGCCACGAACTGAGGATGCTCCTGCAGCAGATATTTCACTGTCAAATTCAACAGCCTTAGGAAAGAAAGGTTTGGAGGCAGGTCCAACTCATGTTCTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCTAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTCGTACACTTTTATTCGGTGGAGGACGCTACCAAAGCTCTTGAGGCAACAAACGGAACAACCCTTGAGAAAAATGGGCAGATTCTAAGAGTAGCATATGCAAAAAGTATCCTGGGCCCTGGATCAGGAACAGCAGGAACTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCAACATTTTCCCAACAGTATGATTCTGTGGGATGGGCTCCAAAAGAATATAACCCAGATGACAAGCAATCTACTGCTCCAGAGCAAACTGGCTCAGAAGTTGGTGCTCCACAATCAGGCTTTGTCTGGGATGAAGCATCCGGTTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCAAACTCAGCAATACATCCCTTGCACTGAACAAAATCAGAATAACACAGCCAATAACCAGTCTGAACCTTCCAAGGCATCTGATGGTTCCAGCAGTAAAAAGGTGATAATTTCTGCACCAGCTACTACTGTTACATCAGTTGAGAAGCCTGCGTCATTGGCAGATGCTGTGCAGGCTGCTGCAACAGCTGCTTTAGCTGCTGAGAAGAAAGAAAAAGAAAAATTGAAGGAGATAAAACTTGCCTCAAAAAGCAGTATTCTAGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAGCAGAGAAGCCATGAGGGGCAGGCCACTCGCGTGGCCCTGGAGGACAATCAGCTCTCCGCTTCTGCTGATGATAGGTCATATTCTTCTGGAAACTCTGCAAAGAGTAAGTTAAAAAATGAGGCTATGGCAAGGGAAAGCAATGCATCTGGTCTGGGAACTCTCACTACTGTTACCCAGGCTGCTGCTTTGGATTCTCAGGGACAGCCACGACCCTTTAGCAATAGCCTTGGTGGAACTTTGATGGGAGTTATAAGGGGGTCAGGAAGAGGGGTTGTGAAATCAGATACTTATTCTGGTTCTATAACCACTGCATCATCCATCTCAAGTTCATCCCCGGCAAATGTTGATGCACAGACTACTACTACTCCCTTTAGAACAGATGTCTCTGCACTGGGTTCATATACCTCATCTGTGGCTGTTGGAAGCGGCAGAAGAAGATTTTCAGAAATGCCTCAGTCTGCTTCAACTCACAAAGAACAATCTCAAACAACCTACAGGGATCGTGCAGCTGAGAGGAGAAGTTTGTATGGCTCATCGTCCTCAGCTGGGAATGATTTGGCTGACTTGGAAATTGGGGATTCAAATCGAGATTTTGCATCAAGGAGGGGTGATCCAATGCCTTTCCCGCCTGGGGTTGGTGGTGGACGCGTGGTTGGAGAAGTCAATGTAGATACTTTTGAGGTGATTACAGCAGACAAAGCAATTGATGAAAATAATGTCGGCAATCGGATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGACTTGGAAAGGATGGAAGTGGAATGGTAGAGCCTGTCCAGGCACAAGCCATGGAAACTAGAGCAGGACTAGGCAGTCAGCAGAAGAAGTTAGATCCTAGCCTCGAGGTGCAGGCAGGGGATAGTTATAAGATGCTTATTCATAAAAAGGCTCTTGCCAGGTTTCGGGAAATGTCCGAGAGTTAA 3192 0.4583 MHSINFFFFFLLSSHFTLFFGRVGGAYDDRRFVDERYPRDAIYQRNTFHRDILDRDGYLPPGPAVGHWNQSKRRGYDEDYPLDRESRRFQRPYHESYNQIDAFRERDIDSYPEYNQFRDGYGSIENYGERGYDKPARFGGHDHDDYAYEDYGYKSRVSHHRREDSHERDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDRRGLSRERDSPHRRHERSRSRSKSKSRSRSRSRSKSQSQSQSHSRSRSQSRGYDDHPRSKSPRGRSHGRSYREDSYGDSRYDRSERRRDREEKRQREHYSVAPSATIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGLTVDGRRLFFEYSSKPTGGPGPDGAMKSGHNHKSITIPSDWMCTICGYINFARRTSCYQCNEPRTEDAPAADISLSNSTALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTAGTSQSSSLAAAAIEAATFSQQYDSVGWAPKEYNPDDKQSTAPEQTGSEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQTQQYIPCTEQNQNNTANNQSEPSKASDGSSSKKVIISAPATTVTSVEKPASLADAVQAAATAALAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQLSASADDRSYSSGNSAKSKLKNEAMARESNASGLGTLTTVTQAAALDSQGQPRPFSNSLGGTLMGVIRGSGRGVVKSDTYSGSITTASSISSSSPANVDAQTTTTPFRTDVSALGSYTSSVAVGSGRRRFSEMPQSASTHKEQSQTTYRDRAAERRSLYGSSSSAGNDLADLEIGDSNRDFASRRGDPMPFPPGVGGGRVVGEVNVDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMVEPVQAQAMETRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSES* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0184 1063 CDD OCRE_SUA_like 603 655 IPR035623 -
Dod05g0184 1063 MobiDBLite consensus disorder prediction 156 216 - -
Dod05g0184 1063 MobiDBLite consensus disorder prediction 889 908 - -
Dod05g0184 1063 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 544 IPR000504 GO:0003723
Dod05g0184 1063 MobiDBLite consensus disorder prediction 659 680 - -
Dod05g0184 1063 Pfam OCRE domain 606 654 IPR041591 -
Dod05g0184 1063 MobiDBLite consensus disorder prediction 889 963 - -
Dod05g0184 1063 SUPERFAMILY RNA-binding domain, RBD 292 391 IPR035979 GO:0003676
Dod05g0184 1063 CDD RRM1_RRM2_RBM5_like 462 542 - -
Dod05g0184 1063 SMART zf_4 411 435 IPR001876 -
Dod05g0184 1063 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 387 IPR000504 GO:0003723
Dod05g0184 1063 MobiDBLite consensus disorder prediction 217 234 - -
Dod05g0184 1063 PANTHER FI21118P1 30 204 - -
Dod05g0184 1063 PANTHER FI21118P1 210 1060 - -
Dod05g0184 1063 Gene3D - 449 578 IPR012677 -
Dod05g0184 1063 SUPERFAMILY Ran binding protein zinc finger-like 404 439 IPR036443 -
Dod05g0184 1063 SMART rrm1_1 465 540 IPR000504 GO:0003723
Dod05g0184 1063 SMART rrm1_1 308 383 IPR000504 GO:0003723
Dod05g0184 1063 Pfam G-patch domain 986 1027 IPR000467 GO:0003676
Dod05g0184 1063 MobiDBLite consensus disorder prediction 250 301 - -
Dod05g0184 1063 Gene3D - 286 395 IPR012677 -
Dod05g0184 1063 MobiDBLite consensus disorder prediction 580 606 - -
Dod05g0184 1063 ProSiteProfiles G-patch domain profile. 985 1031 IPR000467 GO:0003676
Dod05g0184 1063 PANTHER RNA-BINDING PROTEIN 30 204 - -
Dod05g0184 1063 PANTHER RNA-BINDING PROTEIN 210 1060 - -
Dod05g0184 1063 SUPERFAMILY RNA-binding domain, RBD 462 547 IPR035979 GO:0003676
Dod05g0184 1063 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 466 532 IPR000504 GO:0003723
Dod05g0184 1063 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 378 IPR000504 GO:0003723
Dod05g0184 1063 MobiDBLite consensus disorder prediction 235 249 - -
Dod05g0184 1063 MobiDBLite consensus disorder prediction 156 301 - -
Dod05g0184 1063 CDD RRM1_RRM2_RBM5_like 305 385 - -
Dod05g0184 1063 MobiDBLite consensus disorder prediction 753 798 - -
Dod05g0184 1063 ProSitePatterns Zinc finger RanBP2-type signature. 413 432 IPR001876 -
Dod05g0184 1063 Gene3D - 406 439 - -
Dod05g0184 1063 MobiDBLite consensus disorder prediction 753 784 - -
Dod05g0184 1063 ProSiteProfiles Zinc finger RanBP2 type profile. 409 438 IPR001876 -
Dod05g0184 1063 SMART G-patch_5 983 1029 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0184 Dod-Chr5 2274118 2281745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0184 306 528 Eukaryotic Initiation Factors Gene Family AT2G36660 26.000 8.40e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0184 K13094 - gmx:100777686 1573.53