Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0174 ATGGCGGAAGAGAGGTTCACTGGCGTTGTTCAGTGGTTCAACAACAACAAGGGCTTCGGCTTCATCAAGCCCGACGACGACGGCGAAGACCTCTTCGTCCACCAGTCCTCCATCAGATCCGACGGCTACCGAACCCTCCACGACGGCGATCGCGTCCAGTTCTCCATCGCCGCCGGCGACAACCACAAGACCAAGGCCGTCGACGTCACTGCCCCTGACGGCAACCCTCTACAGTCCCGCAGCAGGGACAGTTTCTCCGGAGGCCGAGGCGGTGGAACCGGATTCGGCGTCGGATGGAGGCGCAACGGCGGTGGAGGAGGTTCCGGCGGCGCCGGATGCTATCACTGCGGCGATCTCGGCCACCTCGCTAGGGATTGCAATCGGAGCAACAATTCCGGTGGTGGTGGCGGTGCATGTTTCAGTTGCGGCGGATTTGGACACCTCGCGAGGGATTGTGTGCGTGGAGGCGGTAGCAGTAGTGGCGGCGGTGGCGGTGGCGGTGTCTCGTGCTTTAGGTGCGGCGGATTTGGTCATATGGCAAGGGATTGCGCCACCGCGAAGGGAAGCGGCGGCGGTATTGGTGGCGGTGGTTGTTATAAATGCGGCGAGGTTGGTCATTTGGCTAGGGATTGCATCAATGGCGACGGTGGTGACGGTGGCGGTAGTGGTGGTGGTAATGGTGGTGGGAGAACCACGTGCTTCAATTGTGGGAAGCCTGGGCATTTTGCGAGAGAGTGCGTTGAAGCCTCTGGTTGA 756 0.6124 MAEERFTGVVQWFNNNKGFGFIKPDDDGEDLFVHQSSIRSDGYRTLHDGDRVQFSIAAGDNHKTKAVDVTAPDGNPLQSRSRDSFSGGRGGGTGFGVGWRRNGGGGGSGGAGCYHCGDLGHLARDCNRSNNSGGGGGACFSCGGFGHLARDCVRGGGSSSGGGGGGGVSCFRCGGFGHMARDCATAKGSGGGIGGGGCYKCGEVGHLARDCINGDGGDGGGSGGGNGGGRTTCFNCGKPGHFARECVEASG* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0174 251 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Dod05g0174 251 SMART csp_8 7 72 IPR011129 GO:0003676
Dod05g0174 251 SUPERFAMILY Nucleic acid-binding proteins 4 76 IPR012340 -
Dod05g0174 251 SMART c2hcfinal6 112 128 IPR001878 GO:0003676|GO:0008270
Dod05g0174 251 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Dod05g0174 251 SMART c2hcfinal6 138 154 IPR001878 GO:0003676|GO:0008270
Dod05g0174 251 SMART c2hcfinal6 232 248 IPR001878 GO:0003676|GO:0008270
Dod05g0174 251 SMART c2hcfinal6 197 213 IPR001878 GO:0003676|GO:0008270
Dod05g0174 251 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Dod05g0174 251 Gene3D - 225 251 - -
Dod05g0174 251 MobiDBLite consensus disorder prediction 67 92 - -
Dod05g0174 251 ProSiteProfiles Zinc finger CCHC-type profile. 198 211 IPR001878 GO:0003676|GO:0008270
Dod05g0174 251 ProSiteProfiles Zinc finger CCHC-type profile. 170 183 IPR001878 GO:0003676|GO:0008270
Dod05g0174 251 Gene3D - 162 224 - -
Dod05g0174 251 SUPERFAMILY Retrovirus zinc finger-like domains 214 247 IPR036875 GO:0003676|GO:0008270
Dod05g0174 251 Gene3D - 109 161 - -
Dod05g0174 251 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Dod05g0174 251 SUPERFAMILY Retrovirus zinc finger-like domains 101 154 IPR036875 GO:0003676|GO:0008270
Dod05g0174 251 ProSiteProfiles Zinc finger CCHC-type profile. 139 152 IPR001878 GO:0003676|GO:0008270
Dod05g0174 251 ProSiteProfiles Zinc finger CCHC-type profile. 113 126 IPR001878 GO:0003676|GO:0008270
Dod05g0174 251 PANTHER COLD SHOCK DOMAIN PROTEIN 2 131 250 - -
Dod05g0174 251 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 98 - -
Dod05g0174 251 PANTHER COLD SHOCK DOMAIN PROTEIN 2 101 132 - -
Dod05g0174 251 Pfam Zinc knuckle 138 152 IPR001878 GO:0003676|GO:0008270
Dod05g0174 251 Pfam Zinc knuckle 197 211 IPR001878 GO:0003676|GO:0008270
Dod05g0174 251 Pfam Zinc knuckle 112 126 IPR001878 GO:0003676|GO:0008270
Dod05g0174 251 Pfam Zinc knuckle 169 184 IPR001878 GO:0003676|GO:0008270
Dod05g0174 251 Pfam Zinc knuckle 232 246 IPR001878 GO:0003676|GO:0008270
Dod05g0174 251 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Dod05g0174 251 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Dod05g0174 251 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Dod05g0174 251 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Dod05g0174 251 SUPERFAMILY Retrovirus zinc finger-like domains 162 214 IPR036875 GO:0003676|GO:0008270
Dod05g0174 251 PANTHER COLD SHOCK PROTEIN 2 131 250 - -
Dod05g0174 251 PANTHER COLD SHOCK PROTEIN 2 1 98 - -
Dod05g0174 251 PANTHER COLD SHOCK PROTEIN 2 101 132 - -
Dod05g0174 251 Gene3D - 1 84 IPR012340 -
Dod05g0174 251 ProSiteProfiles Zinc finger CCHC-type profile. 233 246 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0174 Dod-Chr5 2177312 2178067 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Dod05g0174 CSD 1.4e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0174 K09250 - gmx:100806783 310.457