Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0162 ATGCCAGAAGACAAAGACCAATCCTCTTCTGAAAGTTCCATATGTTCACCAAGTTCAAACTCATCAATGGGACCCAAGTACAGACATGTTTTTGCTAGATTGTGGGGTTTTGCCACTTCTTGGAAGAAAAGCAGCACCCCAACTGGAAGAAGAATTCTCCAAAGGGATGTGGAAAAAGAAGAATTCCAGTATGCTAGTACTCTATGCCTCTCATCCTACTATAGTGTCTTTGTGGTTCGCCTGGCAATCATGGTGATGCTAGCAGTCTTGATTGGTTTGCTTACTATACTGACATGGCACTTCACAAAGATTTATACAACAAAATCTCTTAATAGCTTGGCCTATGACTTGCGTTATGAACTTCTACAACGCCCCATCTTGAGGATGTGGAACATTTTGAATTCTACTTCTGAAATTACAGTAGCTCAGGTCAAGCTGTCTCAGTATGTGATCAGAAGCCACAGCAACTTTTCCACTCAAGCAGACCAAATTGAGATGTATGAAGCGATGAGGGCTGTAACATGGGCACTGTTTGCTAGCAGAAAAGCTCTCAACTCAATAACTGTCAAATATAAGAATGGTTTTGTTCAGGCATTTCATAGAGATCTGAAGGATAACAACACATTTTACATTTACTCTGATCTAGCAAATTACTCTATTGGTGCAAGTGGCTATAATGAGGTCAATTCACTTTCAGCACAAGAAGCCTGGAATGAAAACGACAAGAAGTCTGCAATTTGGTATCGTCAGCCGCTTGATCCGGTTACTGGTGAGAAGATTGGAAAAGCAATGCAAATTGCACCAGAAGACTCAATCCATATAGCTGGCCTCTCCCAAGTGCCTGATGGGGTAGCTTCATGGCGTGTTGCTGTGAGCAAGTTCACAGATTCACCATTACTTTCTGCTGCATTGCCACTTTGGGACTCTTCTAATAAGAGCATTGTAGCTGTTGTGGGTGTCACAACTGCACTTTATAGTGTAGGGCAGCTAATGAAAGAGCTAGTTGAGTTGCACAGTGGCCATATGTATTTGACTTCCCAAGAGGGTTATTTACTAGCAACTTCCACAGATGTGCCACTTCTGACAAATTCAACGAAGCCGCCTAACCTTAAGATGGCTGTTGACTGTGAAAATGAAGTAATAAGACTTGGAGCTGAGTATTTACAAAGAACTTACGGGAACAATTCCCCTCCAAGTCATGAAGTTCATGCAGAGAATGTCAAGCTAGGCCACCAGAGATATTATATTGATTCATTCTTCCTAAAGTTGAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCAAGAAAGCATATCATGGGACAGGTTGATGAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCATTGTGTATTATAGTCATTGGTTGGGTTTGCATTTTGATATTGACAAATGGAGTATCAAAGGAAATGAAACTAAGAGCAGAACTGATCAGTCATCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAATTATAAAAGTCAATTTCTTGCAAACATGAGCCATGAACTGAGGACACCTATGGCAGCGATAATCGGGTTACTTGACATTCTTATGTCTGATGATTGTCTCACAAATGAACAATGTGCAACAGTTACTCAGATAAGGAAATGCTCAACTGCGCTGCTCCGTCTGCTTAATAACATCTTGGATATCAGCAAGGTGGAATCTGGAAAATTGGTTCTAGAAGATGCAGAATTTGACTTAGGACGGGAACTTGAAGGGCTTCTAGATATGTTTTCTGTGCAATGCATTAACCACAGTGTAGAGACTGTCTTAGACCTGTCCGATGATATGCCAAACCTAGTTCGGGGTGATTCTGCGAGGGTAGTCCAAATTTTTGCAAATTTGATCAACAACTCAATTAAATTTACTCCATCGGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATTATTGCAGTGACAGTACAAATTATCCTCTTGAACAGAAGAAGCCACAGTGTGCACAAAAGACCAGAGCAAAGCAACATGAGAACCATGCAAAAAGGACATCTAAGAGGGATAACAAAATGATCCTTTGGTTTGAAGTTGAAGACACAGGCTGTGGTATTGACCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCAGATCCATCAACTACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATCGTCAGAAGCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAGGGTCCAGGAACACTGATGCGATTATACCTGCGCCTCAGTGCTCGCGGGGATGCCAGAGGACAACATTGCCAAGTAGATTTTGCTAACAATGGCTTAGTGGTACTGCTTGCACTTCATGGCAACATCGGGAGATCAATCACATCTAAGTGGTTACAGAAAAATGGGGTGTTTACTATAGAGGCATCTGAATGGAATGGATTAACACAAATTCTGAGGGAACTCTTTCATACAAGAAGTTCAGCACATAATAGTAATGGCTTTGATGCACATTATCCAATACATGAGAGTATGAAGTCTAAACTACTGAGCATACAGGAAATTAGGAAGCCAAGTTTTGTCATTGCTGTTGACATTGGACTACTTGACTTGAGCACAGATATATGGAAGGAACAGATTAACTTCCTTCACGAATACTTTGGGAGAGCAAAGTTCATATTGGTGCTAAACCATGACACCTCCAATACCATAAAGATGGAGCTTAGAAGGAAAGGACATGTGATGACAGTCAACAAACCCCTTTACAAAGCAAAAATTGTTCATATTTTGGAAGAAGTCATTAAAGAGAAAAATATTGAGATACAAAAGAAAAATATGGAGACTCCAAGAACCACAACAATGAAAGAGGGTGATTTGGATGAGTTTCTAGAGACTGAGTATACTCATTGTGATGCTGCTAGCTCTGATGATTCTGACATATCTGAAAGTGTTCCTTCTAATACTGTTAGTCCAAGTGGAGATAAATATAGAGAAAATGTAGACAAGTCTCATCCATCATCACAATATCAGATAAATAACTGCACAGTAGGATTAACCAATGAACATTTGGAAGATAACTCTCCGGGGAAGGAAGAGTTATGCCAAAACAACCACAACTCCAATGATGTCACTGCAGAAGCCACTCCAAAATCATTGTCTATTAAACAAGCATCTTTTCCAGCAGGAGCCCAAGGTGAAGATTCTAAATGTGGGGAAACACGTAGGACCACTAGCTCAAGTAGAGTAGTGAATGGAAAGAAATTTCTAGAAGGCCTGAGGATATTGCTCGCAGAAGACACCCCAGTGATCCAAAGGGTTGCAACCATAATGCTTGAAAGAATGGGAGCCACTGTTGTTGCTGTAGGTGATGGACAGCAAGCAGTGGATGCTCTGAATGGTATGCTTAGTGTTGAAGATTGTAGAAGAAGGGAGTCTCTCCTTGAGGAAAGAAACACAAGATCATCTCAAACTGAAATTCTTAGTTGCCCTTCATATGACTTGGTCCTTATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCAGGAAATCAGAAGCAGGAACTGGCTTGCACATTCCAATTGTTGCTCTTACTGCTCATGCAATGTCATGTGATGAAGCCAAGTGCCTGGAAGTTGGCATGGATGCTTATTTAACAAAGCCAATTGACTTCAAACTGATGGAATCGACCATTCTTTCACTCACCAGAAGAACATCCTGA 3750 0.4107 MPEDKDQSSSESSICSPSSNSSMGPKYRHVFARLWGFATSWKKSSTPTGRRILQRDVEKEEFQYASTLCLSSYYSVFVVRLAIMVMLAVLIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTSEITVAQVKLSQYVIRSHSNFSTQADQIEMYEAMRAVTWALFASRKALNSITVKYKNGFVQAFHRDLKDNNTFYIYSDLANYSIGASGYNEVNSLSAQEAWNENDKKSAIWYRQPLDPVTGEKIGKAMQIAPEDSIHIAGLSQVPDGVASWRVAVSKFTDSPLLSAALPLWDSSNKSIVAVVGVTTALYSVGQLMKELVELHSGHMYLTSQEGYLLATSTDVPLLTNSTKPPNLKMAVDCENEVIRLGAEYLQRTYGNNSPPSHEVHAENVKLGHQRYYIDSFFLKLKRLPLVGVIIIPRKHIMGQVDERAFKTLVILISASLCIIVIGWVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAIIGLLDILMSDDCLTNEQCATVTQIRKCSTALLRLLNNILDISKVESGKLVLEDAEFDLGRELEGLLDMFSVQCINHSVETVLDLSDDMPNLVRGDSARVVQIFANLINNSIKFTPSGHIILRGWCENPNYCSDSTNYPLEQKKPQCAQKTRAKQHENHAKRTSKRDNKMILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRSLVNKMGGEIKVVKKEGPGTLMRLYLRLSARGDARGQHCQVDFANNGLVVLLALHGNIGRSITSKWLQKNGVFTIEASEWNGLTQILRELFHTRSSAHNSNGFDAHYPIHESMKSKLLSIQEIRKPSFVIAVDIGLLDLSTDIWKEQINFLHEYFGRAKFILVLNHDTSNTIKMELRRKGHVMTVNKPLYKAKIVHILEEVIKEKNIEIQKKNMETPRTTTMKEGDLDEFLETEYTHCDAASSDDSDISESVPSNTVSPSGDKYRENVDKSHPSSQYQINNCTVGLTNEHLEDNSPGKEELCQNNHNSNDVTAEATPKSLSIKQASFPAGAQGEDSKCGETRRTTSSSRVVNGKKFLEGLRILLAEDTPVIQRVATIMLERMGATVVAVGDGQQAVDALNGMLSVEDCRRRESLLEERNTRSSQTEILSCPSYDLVLMDCQMPKMDGYEATKAIRKSEAGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRRTS* 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0162 1249 SMART HisKA_10 502 568 IPR003661 GO:0000155|GO:0007165
Dod05g0162 1249 Gene3D - 1077 1244 - -
Dod05g0162 1249 MobiDBLite consensus disorder prediction 1037 1053 - -
Dod05g0162 1249 MobiDBLite consensus disorder prediction 977 1015 - -
Dod05g0162 1249 MobiDBLite consensus disorder prediction 7 23 - -
Dod05g0162 1249 Gene3D - 471 566 - -
Dod05g0162 1249 MobiDBLite consensus disorder prediction 1 23 - -
Dod05g0162 1249 CDD HisKA 503 564 IPR003661 GO:0000155|GO:0007165
Dod05g0162 1249 PRINTS Bacterial sensor protein C-terminal signature 751 764 IPR004358 GO:0016310|GO:0016772
Dod05g0162 1249 PRINTS Bacterial sensor protein C-terminal signature 710 720 IPR004358 GO:0016310|GO:0016772
Dod05g0162 1249 PRINTS Bacterial sensor protein C-terminal signature 692 706 IPR004358 GO:0016310|GO:0016772
Dod05g0162 1249 PRINTS Bacterial sensor protein C-terminal signature 727 745 IPR004358 GO:0016310|GO:0016772
Dod05g0162 1249 Pfam Response regulator receiver domain 1099 1238 IPR001789 GO:0000160
Dod05g0162 1249 PANTHER OSMOSENSOR HISTIDINE KINASE 23 1246 - -
Dod05g0162 1249 MobiDBLite consensus disorder prediction 1027 1053 - -
Dod05g0162 1249 PANTHER TWO-COMPONENT HISTIDINE KINASE 23 1246 - -
Dod05g0162 1249 ProSiteProfiles Response regulatory domain profile. 1098 1245 IPR001789 GO:0000160
Dod05g0162 1249 SMART REC_2 1097 1241 IPR001789 GO:0000160
Dod05g0162 1249 CDD REC_hyHK_CKI1_RcsC-like 1099 1241 - -
Dod05g0162 1249 ProSiteProfiles Histidine kinase domain profile. 509 767 IPR005467 -
Dod05g0162 1249 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 489 569 IPR036097 GO:0000155|GO:0007165
Dod05g0162 1249 SMART HKATPase_4 615 767 IPR003594 -
Dod05g0162 1249 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 557 764 IPR036890 -
Dod05g0162 1249 Coils Coil 932 952 - -
Dod05g0162 1249 SUPERFAMILY CheY-like 1095 1247 IPR011006 -
Dod05g0162 1249 Gene3D - 567 770 IPR036890 -
Dod05g0162 1249 Pfam His Kinase A (phospho-acceptor) domain 503 568 IPR003661 GO:0000155|GO:0007165
Dod05g0162 1249 MobiDBLite consensus disorder prediction 982 999 - -
Dod05g0162 1249 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 615 765 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0162 Dod-Chr5 2056119 2062885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0162 16 1246 Histidine Kinase Gene Family AT2G17820 63.124 0.0 1514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod05g0162 HATPase_c 5e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0162 - - gmx:100801970 2018.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0434 02 5729058 5736600 Dod05g0162 05 2056119 2062885 PCT