Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0133 ATGGAGTATGTGGCAAATCCATGTCCTTTGTTGGGTTCATTGGGGAACCTTGTTGAAAGGGTCAACATGTTTGGTACCCTTGCCCTCTCTGCCATCATTAGGAGCATCTTCTCTGCGATCTTCACCTTCTGCTTTGCATTAGTGGGGACTTTGCTGGGGGCTATGACTGGAGCTTTGATAGGCCAAGAGACTGAGAGTGGCTTCATTAGAGGTGCTGCTGTAGGAGCCATATCAGGAGCTGTTTTCTCCATTGAAGTGTTTGAATCTTCTCTTGTTCTTTGGCAGTCTGATGAATCTGGAATTGGGTGTCTCTTGTACTTGATTGATGTCATTGCTAGCCTATTGAGTGGGAGACTTGTGCGTGAAAGGATAGGTCCAGCCATGTTGAGTGCCGTCCAAAGTCAGATGGGTGCTGTTGAAATGAGCTTTGATGAGGTTCAAAACATCTTTGACACTGGTGGTGCTAAAGGTTTATCAGGAGATTCGGTTGAAAAGATCCCAAAGATCACAATTACAAGTGACAACAATTTTGATGCCTCTGGTGAAAGAGTTTCATGCTCAGTTTGCCTCCAGGACTTTCAACTTGGAGAGACAGTTAGAAGCTTGCCCCATTGCCATCACATGTTTCACCTACCTTGTATTGACAAGTGGCTCATCAGGCATGGGTCTTGCCCCTTGTGCAGAAGGGATCTGTAA 696 0.4583 MEYVANPCPLLGSLGNLVERVNMFGTLALSAIIRSIFSAIFTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEMSFDEVQNIFDTGGAKGLSGDSVEKIPKITITSDNNFDASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLIRHGSCPLCRRDL* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0133 231 CDD RING-H2_PA-TM-RING 186 228 - -
Dod05g0133 231 Pfam Ring finger domain 185 228 IPR001841 -
Dod05g0133 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 231 IPR013083 -
Dod05g0133 231 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 13 231 - -
Dod05g0133 231 SMART ring_2 186 227 IPR001841 -
Dod05g0133 231 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 13 231 IPR044523 -
Dod05g0133 231 SUPERFAMILY RING/U-box 185 231 - -
Dod05g0133 231 ProSiteProfiles Zinc finger RING-type profile. 186 228 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0133 Dod-Chr5 1795904 1798463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0133 16 231 C3H Transcription Factor Family AT5G66070 77.315 2.43e-118 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0133 - - gmx:100306109 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0410 02 5526077 5528089 Dod05g0133 05 1795904 1798463 PCT