Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0106 ATGGGAGGTGACGGTGCAGCTGGGGGTTCGACGGAGTCGAAGGTCGCCGAAGGCGTCAGCATCAACATTCGCTGCTCCAATGGTTCCAAGTTCTCGGTTCAGATTCCCCTCGATTCCTCCGTTGGAACCTTCAAGGATGTCGTCGCTCGCAGTTGCGACATCCCAGCGGAGCAGCAGCGCCTGATTTACAAGGGTCGGATCTTGAAGGACGATCAAACGCTGCAAAGCTACGGTCTGGATGCAGATCACACTGTCCATTTGGTTCGTGGTTTTGCACCTGCCAATGCAACTGGTGGGCCCACTGCTAGTGGCACCAATACCACAACAAATAATGCCAGAGGTACTGGTGATAATGAGGGTGGATTTTCAAGAGTCCGTGGTTTTGGATCCTCACCATTCCCTGCATTTGACCTCAATGAGATTGGGGGCAATGGCTTATTCGGAGAGGGATTTCCAGATCTTGAACAGATGCAGCAACCATTTATTTCGAATCCAAATTTAATGAGAGAAATAATGAACACACCTGCTATGCAGAACTTAATAAATAATCCTGAGATTGTGCGGAATCTTATAATGAGTAACCCACAGATGCAGGAGCTCATGGATCGAAACCCTGAGCTAGCACACATACTTAATGATCCTAGCACCCTCCGCCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGGAATACTGACAGAGCAATGAGCAACATTGAATCGTCTCCTGAGGGATTTAACATGCTGAGGCGTATGTATGAAAATGTTCAGGAACCATTTCTAAATGCCACTACGATGGCTGGAAATACAGGAAACAATAATGCTCCAATTTCTGGGACTCAAGCTAGGGACCAATCAACTAATCCCTCAACTGCTAGTTCTGAAGCAACTGCTGGTTCTCCATCACCCAATACTAACCCACTTCCTAATCCTTGGTCCTCAACTGGAACTGGTGGTGCCCAAAATAACAGCAGAAGGTCAACCACTGGTGGGGATGCTAGGCAGCAGGCACCTCCTGGCTTAGGAGGGCTTGGTCTTCCAGATCTTCAAGGCATGCTGGGCAGCAATGCTATGCCAGATCCTGCTTTATTGACCCAGTTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAGACTATGAATCAGATTCTTGGTGCTAATACTGAGCAACATGGCTTGCCTGATATAAATTCTCTTAGAGAAGTGATGCAAAATCCAGAGTTCCTTCGCTTGTTTTCTTCGCCTGAGACACTGCAGCAACTTATGTCTTTCCAGCAAGCTCTTTTGTCTCAGCTTGGTCAGCAACAATCATCACGGTAA 1356 0.472 MGGDGAAGGSTESKVAEGVSINIRCSNGSKFSVQIPLDSSVGTFKDVVARSCDIPAEQQRLIYKGRILKDDQTLQSYGLDADHTVHLVRGFAPANATGGPTASGTNTTTNNARGTGDNEGGFSRVRGFGSSPFPAFDLNEIGGNGLFGEGFPDLEQMQQPFISNPNLMREIMNTPAMQNLINNPEIVRNLIMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNNNAPISGTQARDQSTNPSTASSEATAGSPSPNTNPLPNPWSSTGTGGAQNNSRRSTTGGDARQQAPPGLGGLGLPDLQGMLGSNAMPDPALLTQLMQNPAISQMMQSMLSNPQTMNQILGANTEQHGLPDINSLREVMQNPEFLRLFSSPETLQQLMSFQQALLSQLGQQQSSR* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0106 451 MobiDBLite consensus disorder prediction 95 120 - -
Dod05g0106 451 Gene3D - 189 247 - -
Dod05g0106 451 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Dod05g0106 451 SMART CBM 351 395 IPR006636 -
Dod05g0106 451 SMART CBM 398 433 IPR006636 -
Dod05g0106 451 SMART CBM 194 233 IPR006636 -
Dod05g0106 451 SMART CBM 144 181 IPR006636 -
Dod05g0106 451 MobiDBLite consensus disorder prediction 269 339 - -
Dod05g0106 451 MobiDBLite consensus disorder prediction 269 358 - -
Dod05g0106 451 CDD Ubl_Dsk2p_like 19 91 - -
Dod05g0106 451 Gene3D - 9 101 - -
Dod05g0106 451 SUPERFAMILY Ubiquitin-like 12 101 IPR029071 -
Dod05g0106 451 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Dod05g0106 451 SMART ubq_7 19 90 IPR000626 GO:0005515
Dod05g0106 451 MobiDBLite consensus disorder prediction 98 117 - -
Dod05g0106 451 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 12 450 - -
Dod05g0106 451 PANTHER UBIQUILIN 12 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0106 Dod-Chr5 1509347 1514753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0106 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 6.03e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0106 K04523 - gmx:100776447 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0379 02 5097577 5101693 Dod05g0106 05 1509347 1514753 PCT