Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0100 ATGCCGAAAGTCAAAGCTGATGCAAAAGCCGCTGATAACCGGTTGAAGCGCAAGGGCGCTGGAACCGGGATGAAGCAAGCGAAGAAAGCGAAGGATCCGAACAAGCCGAAAAGGCCTCCGAGTGCCTTCTTCGTTTTCATGTCTGAGTTTAGAGAAACATTCAAGAAGGAGCATCCTAACAACAAATCTGTTGCAGTTGTTGGAAAAGCTGGTGGTGACAAATGGAAATCGATGTCTGATGCTGAAAAAGCTCCCTACATTGCTAAGGCAGAGAAGAAGAAAGAGGAGTATGAGAAGACTATGCGGGCTTACAATAGGAAATTGGAGGGTAAGAATACTGAGGAAGATGAGTCTGACAAGTCAAAATCTGAAGTAAATGATGAGGATGATGATGAGGAGGATGAAGATGATGATGAGTGA 420 0.4476 MPKVKADAKAADNRLKRKGAGTGMKQAKKAKDPNKPKRPPSAFFVFMSEFRETFKKEHPNNKSVAVVGKAGGDKWKSMSDAEKAPYIAKAEKKKEEYEKTMRAYNRKLEGKNTEEDESDKSKSEVNDEDDDEEDEDDDE* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0100 139 CDD HMGB-UBF_HMG-box 36 87 - -
Dod05g0100 139 SUPERFAMILY HMG-box 22 106 IPR036910 -
Dod05g0100 139 Gene3D High mobility group box domain 21 128 IPR036910 -
Dod05g0100 139 Pfam HMG (high mobility group) box 36 105 IPR009071 -
Dod05g0100 139 Coils Coil 87 114 - -
Dod05g0100 139 MobiDBLite consensus disorder prediction 1 19 - -
Dod05g0100 139 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 136 IPR031061 -
Dod05g0100 139 MobiDBLite consensus disorder prediction 1 41 - -
Dod05g0100 139 MobiDBLite consensus disorder prediction 103 139 - -
Dod05g0100 139 MobiDBLite consensus disorder prediction 121 139 - -
Dod05g0100 139 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 36 105 IPR009071 -
Dod05g0100 139 MobiDBLite consensus disorder prediction 103 120 - -
Dod05g0100 139 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 136 - -
Dod05g0100 139 SMART hmgende2 35 106 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0100 Dod-Chr5 1412498 1414655 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dod05g0100 HMG_box 1.7e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0100 K25507 K22507 ahf:112797235 184.496