Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0087 ATGACTCGAATTATAAGAGTTCTTCAAGCAGCTTCCGCCGACGCTGTGCCGCCGGCCGAGGCAGCTTCCGTGGAGTCCGACTTTGTCGTCATCCTGGCGGCGCTGCTCTGCGCCCTCATCTGCGTCGTCGGCCTCATTGCCGTCGCCCGCTGTGCTTGGCTCCGCCGCGTCCCCGTCGCCGGCGGAGCCTCGACGCGCCGGCAGGCGCTCGCCAACCGCGGCCTCAAGAAGAAGGTCCTCAACTCGCTCCCGAGGTTCACCTACGTCGCCGGCGGCGGCGATAACTCCAGCGACAGTAGCAAGTGGGTGGCGTCGTCGGAGTGCGCGATCTGCCTGGCGGAATTCGCCGCCGGCGACGAGGTCCGTGTGCTGCCGCAGTGCGGCCACGGCTTCCACGTGTCTTGCATTGACACGTGGCTGGGATCGCACTCCTCATGCCCTTCCTGCCGCGCCCTCCTCGCAGTTGCAAGGTGCCAGAAGTGCGGCCAGTTTCCGGCGGTTCCCGGCGGCGGCGCTGCAGTGGTGGCCATCGCCGTCCAAACGGAGTCGAAGTCTGTTGATGGTGGCAATGCCGGTGCTGCTGCTGCTGCCGATTGTAGCAATAGCAACAGTGTTAACAATGATTTCATACCTTGA 636 0.6462 MTRIIRVLQAASADAVPPAEAASVESDFVVILAALLCALICVVGLIAVARCAWLRRVPVAGGASTRRQALANRGLKKKVLNSLPRFTYVAGGGDNSSDSSKWVASSECAICLAEFAAGDEVRVLPQCGHGFHVSCIDTWLGSHSSCPSCRALLAVARCQKCGQFPAVPGGGAAVVAIAVQTESKSVDGGNAGAAAAADCSNSNSVNNDFIP* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0087 211 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Dod05g0087 211 SUPERFAMILY RING/U-box 107 155 - -
Dod05g0087 211 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 185 - -
Dod05g0087 211 SMART ring_2 108 149 IPR001841 -
Dod05g0087 211 Pfam Ring finger domain 107 150 IPR001841 -
Dod05g0087 211 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 185 - -
Dod05g0087 211 CDD RING-H2_PA-TM-RING 107 150 - -
Dod05g0087 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 154 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0087 Dod-Chr5 1193743 1195090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0087 1 161 C3H Transcription Factor Family AT1G76410 60.241 8.20e-61 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0087 - - vun:114170353 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0350 02 4783482 4784590 Dod05g0087 05 1193743 1195090 PCT