Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0045 ATGTCTTGTATGCCTTCCAACATCAACCTTGATGAATGGCATCAAACAAGCATTCCCATCGTTGCATCCAGAGCTGATAGCAGCTCCGTTCATGCATCTTCAGATGATTCCTTGAACCCTTCAAGCCGATTCCTTTCTCAGTTTAGCCTCATTCCTGGTAATATAAGCAGTAGACTTAGCAGAACCACCGGTTTGGGGTCATCAAGGCCTTGTCCTGTTTCTTCTTCAAGTCTCTCACTATTTGACGATGAAGATGAGCTTAATCAACAGGATCCAGGACCTACTGGCAATATGATTAACAGAAATGACACTCTGCAATGTAGTGGCCTACTTCCTACGTCTTTTGTGAATCAAATGCCTAAACAGTGTCATGAAGACACTTCTAATAATTTACGGTCAAGCTCAAACACCATAGCATCGGGTTTGTTTGGCATCTTGCACAGCAATCCCACAGATGGAGTTGGTACAAGAGAAGGGCTGGATGTGAATGTATTTTCTCCAAGAATTTTGCCTGAGACAGAAAATAGTCATACTAGACATACAGATCGACGAAATGGAGCTCAAGAACCAGTTGATCGGAATGTTCATTTTGGCCGAGCTTTAAGTGTTGGAAGGCTTCGCAATCGATTTTTTCGCAGATCAACATTACCTGACCTAACCTTTTGCCCTCCACAACAAGAGGGAGAAGTGAGAGATGCTGGTCCGGATACTGGAAGATATGCCGAGGAGGGGGATTCAAGAATGTTACCATCTGATCGCAATTCTCCTTCTACATCTGGATATCCTATAGCCAGTATGTCTAGCTCTGTGTTTAGCATCCATGACTATGAGGTTGAGACTTCAAGATCAAGAGAAAGTAGGTATCAGGATCTACTGGAACATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGATCCCAGGTCCGTGCTCTTCAGCGGATGGGTAGCCGGTTTGAAAATCATTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACATAGAAATGGATCTTGTACATGCCGAATCAGTAACCCTGACACCAATTCAAATGATGATACTAGTGCTAGAGGTAGCATATCAAGAATTGTTATGCTAGCAGAAGCCTTATTCGAGGTTCTGGATGAAATTCACCTGCAATCTGTGCTGTTATCTTCCCGGCCATCCGCATCTTCTATCGGATCTGTACCTGCACCAAATGAAGTTGTGGAGTCCTTACCTGTCAGACTATATACGAAGTTGCATAATCATCAAGAAGATGCTGCACAATGCTATATATGCCTTGTCGAGTATGAGGATGGAGACAGTGTGCGAGTACTGCCTTGCCATCATGAATTTCATAGAACATGTGTGGATAAGTGGCTGAAGGAGATTCACAGGGTATGTCCACTATGCCGGGGGGACATCTGCATATCTGATTCACAGCCAACAGAAAACTCAAGTGGCTAG 1452 0.438 MSCMPSNINLDEWHQTSIPIVASRADSSSVHASSDDSLNPSSRFLSQFSLIPGNISSRLSRTTGLGSSRPCPVSSSSLSLFDDEDELNQQDPGPTGNMINRNDTLQCSGLLPTSFVNQMPKQCHEDTSNNLRSSSNTIASGLFGILHSNPTDGVGTREGLDVNVFSPRILPETENSHTRHTDRRNGAQEPVDRNVHFGRALSVGRLRNRFFRRSTLPDLTFCPPQQEGEVRDAGPDTGRYAEEGDSRMLPSDRNSPSTSGYPIASMSSSVFSIHDYEVETSRSRESRYQDLLEHRSNFLERRRRIRSQVRALQRMGSRFENHSGHDRSCILSGQHRNGSCTCRISNPDTNSNDDTSARGSISRIVMLAEALFEVLDEIHLQSVLLSSRPSASSIGSVPAPNEVVESLPVRLYTKLHNHQEDAAQCYICLVEYEDGDSVRVLPCHHEFHRTCVDKWLKEIHRVCPLCRGDICISDSQPTENSSG* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0045 483 SUPERFAMILY RING/U-box 403 473 - -
Dod05g0045 483 CDD mRING-H2-C3H2C2D_ZSWM2 424 467 - -
Dod05g0045 483 SMART ring_2 425 466 IPR001841 -
Dod05g0045 483 Pfam Ring finger domain 424 467 IPR001841 -
Dod05g0045 483 MobiDBLite consensus disorder prediction 173 190 - -
Dod05g0045 483 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 482 - -
Dod05g0045 483 MobiDBLite consensus disorder prediction 232 249 - -
Dod05g0045 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 472 IPR013083 -
Dod05g0045 483 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 482 - -
Dod05g0045 483 MobiDBLite consensus disorder prediction 61 83 - -
Dod05g0045 483 ProSiteProfiles Zinc finger RING-type profile. 425 467 IPR001841 -
Dod05g0045 483 MobiDBLite consensus disorder prediction 171 193 - -
Dod05g0045 483 MobiDBLite consensus disorder prediction 61 99 - -
Dod05g0045 483 MobiDBLite consensus disorder prediction 221 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0045 Dod-Chr5 659434 663336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0045 155 474 C3H Transcription Factor Family AT5G45290 57.402 1.52e-108 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0045 - - gmx:100800896 649.047