Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0038 ATGGCGGATGGTAATGATGGTCATCCCCTCTTCGATAACAAAGTCTCTTCCATACTAATGGCCGTTGGATCAGCTGTTTTTATGGTCACAATCTACCGTCTCTTGTCCATTTGCTTATTCAACCGACATCTTATCACAAACCAGCAAGACGCAACAACAAACCGGTTAGCTCCTAATAATACTGCTGCAGCAGCTTCTTCAGTAGTGTCACATCTGATTCCAACCCACAAGTATGAGAAGAAGAGAAAGAATGAATTGGAAGATGATGGTGGTGGTGGTGGTGGTGGTGTTGGTGATGAAGCTGATGATTGCACATGTGCTGTGTGCTTGGGGGAATTTGAGGAAGGCGAGGAGTTAAAGACTTTGCCGGAGTGCATGCACTCTTTCCACGTGTCATGCATAGATATGTGGCTCCATTCCCATTCAAGCTGCCCCATTTGCCGGGCTGAGGCCACACCTCAGACTCAGCTGACTGATGATGAACACCATCACCACAACACAGAAATGATGCAAATTGCTCTTGCCCAAGATAGGTTGGAGCGAGGGTGA 549 0.4718 MADGNDGHPLFDNKVSSILMAVGSAVFMVTIYRLLSICLFNRHLITNQQDATTNRLAPNNTAAAASSVVSHLIPTHKYEKKRKNELEDDGGGGGGGVGDEADDCTCAVCLGEFEEGEELKTLPECMHSFHVSCIDMWLHSHSSCPICRAEATPQTQLTDDEHHHHNTEMMQIALAQDRLERG* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0038 182 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 3 175 - -
Dod05g0038 182 Pfam Ring finger domain 105 148 IPR001841 -
Dod05g0038 182 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Dod05g0038 182 SMART ring_2 106 147 IPR001841 -
Dod05g0038 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 155 IPR013083 -
Dod05g0038 182 SUPERFAMILY RING/U-box 99 161 - -
Dod05g0038 182 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 175 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0038 Dod-Chr5 582376 583223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0038 17 152 C3H Transcription Factor Family AT5G17600 33.333 3.12e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0038 - - aip:107639941 159.073