Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0014 ATGGCGACTTCAAAATCAAGTTTCATCAGTGGGACTGTGTTAGCAGCAGCAGCAGCAGCAGCTGCAGCTCAATCTCATCATCATTCCTGTCCCCAAACCATAAACCTCCGCGGGGAGCGTGGTGTGTCGAGTCCTGTTGCTTCCCGCACCCGCAGGCTCACACTCTCTTCCAATTTCACAACAAGAACACGCCGCTTTCACCTCTTGTTCTGCCGCTCTGCTTTCCATTTGGAAGAGGAAGAGGAAAAGGTTCCACTTCCACCGCCACAACAACAACACACCACAAACCTCAGCAAGCTTTACGTCTGTAACTTACCATGGTCCCTCTCCCCCGCCCACATCAAATCCCTCTTTTCTCAATGCGGAACTGTTACCGATGTCCAGGTGATAAAGAACAAAAATGGGCGATTGACTGGCTTTGCCTTCGTTACCATGGCTTCTGGCGATCAGGCTCAGGCTGCAATTCGTAAATTTCATTCTCACCAAATATCAGGCCAGATGATAAGGGTAGAGCCTGCGAAGAGATTTAAGAAACCTCGTCCTCCAGGTCCCCCTTCTGATGAGACATGCCATAAAATTTTTGCATCCAATCTTGCCTGGAAAGTAAGATCTGGCCATCTCAGAGAATTCTTCACTGGGAATTTTAAAAAGCCAGTTTCAGCCAGGGTTGTGTTTGACAGCCCTTCTGGAAGATGTGCTGGGTATGGATTTGTTTCTTTTGTTACAGAGGAGGAAGCAGAGGATGCCATTTCTGCTTTGGATGGGAAGGAGTTAATGGGACGACCTGTTCGCCTAAAATTTAGCCGAAAGACCGTTGAAAAAGCTGGTAGTGACAAAGATGAGGAGCAAGGTTATGATGATCAATTGGAAGTTTCATAA 879 0.4744 MATSKSSFISGTVLAAAAAAAAAQSHHHSCPQTINLRGERGVSSPVASRTRRLTLSSNFTTRTRRFHLLFCRSAFHLEEEEEKVPLPPPQQQHTTNLSKLYVCNLPWSLSPAHIKSLFSQCGTVTDVQVIKNKNGRLTGFAFVTMASGDQAQAAIRKFHSHQISGQMIRVEPAKRFKKPRPPGPPSDETCHKIFASNLAWKVRSGHLREFFTGNFKKPVSARVVFDSPSGRCAGYGFVSFVTEEEAEDAISALDGKELMGRPVRLKFSRKTVEKAGSDKDEEQGYDDQLEVS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0014 292 Gene3D - 177 282 IPR012677 -
Dod05g0014 292 Gene3D - 72 176 IPR012677 -
Dod05g0014 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 270 IPR000504 GO:0003723
Dod05g0014 292 SMART rrm1_1 99 171 IPR000504 GO:0003723
Dod05g0014 292 SMART rrm1_1 192 266 IPR000504 GO:0003723
Dod05g0014 292 PANTHER CHLOROPLAST, PUTATIVE-RELATED 15 284 - -
Dod05g0014 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 263 IPR000504 GO:0003723
Dod05g0014 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 168 IPR000504 GO:0003723
Dod05g0014 292 SUPERFAMILY RNA-binding domain, RBD 89 183 IPR035979 GO:0003676
Dod05g0014 292 CDD RRM_SF 100 171 - -
Dod05g0014 292 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Dod05g0014 292 PANTHER OS02G0815200 PROTEIN 15 284 - -
Dod05g0014 292 MobiDBLite consensus disorder prediction 270 292 - -
Dod05g0014 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 175 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0014 Dod-Chr5 384971 387437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0014 193 277 Eukaryotic Initiation Factors Gene Family AT4G34110 29.885 4.38e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0014 - - rcu:8289087 260.766