Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0013 ATGGCTTCTCTTGGCAATCCAAGAAGTTGGATTCCATATATGAACGGCAAAGACTGCTCCCAGGGATTCTGTAGCTTGAACTGTCCACAGTGGTGTAACAGAGTGTATCCTCCTCCTCCACCTTTTGAATATCTTGATGATAATGATTCAAGCCCAAATTTCTCCCCTCTTGTTATTGCAATCATTGGGATCTTGGCCACTGCTTTTCTTCTTGTGAGTTACTATGCCATAATATCCAAGTACTGTGGCCGCAGAGAGAACCAAGACCACCTAAACGATGACGAACTACAAGAGGATCACAGCCCCTCACTCCGTGAACCCTGGCATGCCTCAACCATTGGCTTGGATGAGTCTATGATCAAGTCCATGGCAGTGTGCAAGTACAAGAGAGGAGACGGTTTGGTTCAAGTCACAGATTGTTCTGTTTGTCTCAGTGAGTTCCAAGATGATGAGAGTGTAAGGCTCTTGCCCAAGTGCAGCCATGCTTTCCATCTCCCTTGCATTGACACGTGGCTCAAATCTCACTCTACCTGCCCTCTTTGCCGTGCCACCATATTCCCCTTCAATGCTTCAGCTCCTCATCAGGTTCCAGCCATGGTGATGGAGCTCCCTTCAAGGGATGAAACGTCGTCAGAGACGGGAAACGTGGCTGTTGGAAGTGGCAATGAGATTGGGGTGGTGGAAGAAGAAGAATGCATACATGGTACTCCTCCTCCTCCTCCTCCTCCTCCTAGTAGTGGAGCTTCAAAGCCGCCTTCATTGCGTGCGTTTAGTGATTTGGGTAGCATGCAAGGAAGGCACAGAATAATTGAGATAAGAGATGATGAATTAGAAGTGTATGAGTCCATTGGAAGGTCAGTTTCTATGGGCCATTCCCATTCGTTTCAAAGTGGTGGTGTTTCAGTTGCTCATGTTGATGTACATATGAATCAAGAGCAGCATTCTCGAGCAGAAGGATGCTCTAGTACTGAAGCTGGTCCATCGAAGAGATCTCGAGGAGAGAGTAGCAAGTGGAGCTATAAGAGAAAGGTCTTGCTGCATTGTGTCCTGAGCCCAATCGCTACGAAAAGGTCATTTTCCAGTGGAAGGTTCTCTCTTAGCACAAGTGGCAGAGGTAGGCAGGGAATTATCCCTGTGGCTGTCTGA 1146 0.4756 MASLGNPRSWIPYMNGKDCSQGFCSLNCPQWCNRVYPPPPPFEYLDDNDSSPNFSPLVIAIIGILATAFLLVSYYAIISKYCGRRENQDHLNDDELQEDHSPSLREPWHASTIGLDESMIKSMAVCKYKRGDGLVQVTDCSVCLSEFQDDESVRLLPKCSHAFHLPCIDTWLKSHSTCPLCRATIFPFNASAPHQVPAMVMELPSRDETSSETGNVAVGSGNEIGVVEEEECIHGTPPPPPPPPSSGASKPPSLRAFSDLGSMQGRHRIIEIRDDELEVYESIGRSVSMGHSHSFQSGGVSVAHVDVHMNQEQHSRAEGCSSTEAGPSKRSRGESSKWSYKRKVLLHCVLSPIATKRSFSSGRFSLSTSGRGRQGIIPVAV* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0013 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 187 IPR013083 -
Dod05g0013 381 SUPERFAMILY RING/U-box 139 188 - -
Dod05g0013 381 Pfam Ring finger domain 139 182 IPR001841 -
Dod05g0013 381 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 370 - -
Dod05g0013 381 MobiDBLite consensus disorder prediction 231 260 - -
Dod05g0013 381 MobiDBLite consensus disorder prediction 234 249 - -
Dod05g0013 381 MobiDBLite consensus disorder prediction 311 336 - -
Dod05g0013 381 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 370 IPR044675 -
Dod05g0013 381 MobiDBLite consensus disorder prediction 314 329 - -
Dod05g0013 381 CDD RING-H2_PA-TM-RING 139 182 - -
Dod05g0013 381 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Dod05g0013 381 SMART ring_2 140 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0013 Dod-Chr5 379751 381708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0013 1 276 C3H Transcription Factor Family AT3G03550 43.333 1.64e-63 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0013 - - gmx:100792267 481.1